Desulfolithobacter dissulfuricans: GF1_23530
Help
Entry
GF1_23530 CDS
T08652
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddu
Desulfolithobacter dissulfuricans
Pathway
ddu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GF1_23530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddu03021
]
GF1_23530 (rpoC)
03400 DNA repair and recombination proteins [BR:
ddu03400
]
GF1_23530 (rpoC)
Enzymes [BR:
ddu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GF1_23530 (rpoC)
Transcription machinery [BR:
ddu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GF1_23530 (rpoC)
DNA repair and recombination proteins [BR:
ddu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GF1_23530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BCO09977
UniProt:
A0A915U3K2
LinkDB
All DBs
Position
complement(2601141..2605211)
Genome browser
AA seq
1356 aa
AA seq
DB search
MEDLFSFFQKPKGPVSFNKVKISLASPEKIREWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIELAAPVAHIWFLKSL
PSKIGAILDMTLKQLERILYFESYAVVESKVEALSVGQLLNEEKYRAFLEEYPGQFRVGI
GAEAIREMLAALDLQKLSEELREEMKTTGSATKRTKLGKRLHVVEAFRDSGNRPEWMILE
VIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
EAVDVLFDNGRRGRTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPH
LRLHQCGLPKKMALELFKPFIYNKLETLGYVTTIKSARKMVEKGSKEVWDVLDEIVREYP
VILNRAPTLHRLGMQAFEVVLVEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSVEAQVES
RVLMMSTNNILSPANGGPIIIPTQDIVLGLYYMTRERYGVVGEGSMFGSVAEARMAYDHG
AADLQARVKVRIDGKMVDTTIGRILVSELLPESIPFSLVNKELSKKELAFLIDYTYRHAG
TKDTVILADRLKDLGYEYATRAGISICINDMKIPVKKEDFVEESERAAAEVEQQYSDGLI
TDGEKYNKIVDIWSKATDRITKEMMDEMAVEYVQDSEGKVREIKSFNSVFIMADSGARGS
KDQIRQLAGMRGLMAKPSGEIIETPIKANFREGLNVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDSTIVEKDCGTMRGMLAEPLIEGGEVIVRIGDRILGRVALEDVVDPYS
GEILVAADEEITEEKVEKIEAAGVDQVMIRSVLTCESKRGVCAMCYGRDLGRGHMVNIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGTASRSVEQAEVRTQRGGTVKYKNLHTVTNAEGLD
VVMNRNAEITVLDDKGVDRERFPVPYGAELKVKDGATVEPGAVIADWDAFAIPIVAEVGG
KIKYGDVIEGETMQERVDQVTGKASKVITSATSSRQLNPRITIKDERGRTKKLPGGDLPA
RYSLPVGSIITVDEGVEITPGTIVAKIPRETTKTKDITGGLPRVAELFEVRKPKEQAIIT
EIDGRVSFGKDLKGKRRVIVTPETGEPKEYLIPKGKHITVHEGDYVKAGEPLMEGSILPN
DILRVLGAEALARFLVNEIQEVYRLQGVRINDKHIEVIVRQMLKRVKITDPGDSRFMLDE
QVEWWKFREENERLMAEGRQPASAEPLLLGVTRASLSTDSFISAASFQETTKVLTNAAMA
GKVDYLTGLKENVIMGRLISAGTGLERYRLRKEGKK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
gtggaagatctgttcagtttttttcaaaagccaaaaggtcccgtcagcttcaacaaggtc
aagatctcgcttgcctcgccggagaagatccgcgagtggtcccatggcgaagtcaagaaa
ccagagaccatcaactaccgtaccttcaaaccggaacgcgacggcctgttctgtgccaag
atcttcggaccggtcaaggattacgagtgtaactgcggcaagtacaagcggatgaagcac
cgcggcgtggtctgcgagaagtgcggtgttgaagtcatccagtccaaggtgcgccgggaa
cggctcggtcacatcgaactggctgctcctgtggcccatatatggttcttgaaaagcctg
ccatccaagatcggggcgatcctggatatgaccctgaagcagctggagcggattctctat
ttcgaatcctatgcggtggtggagtccaaggtcgaggcgctctcggtgggccagttgctc
aacgaggaaaaataccgggcttttcttgaagagtatccgggccagttccgggtcggtatc
ggggccgaggctatccgcgagatgctggcggcgctcgatctgcagaagctctccgaggaa
ctgcgagaggagatgaagaccacaggctccgccaccaagcggaccaagcttggcaaacgg
ctccatgtggtcgaggccttccgcgattcgggcaaccgtcccgagtggatgatcctggag
gttattccggtgctgccgccggacctgcgtccgctggtacccctggagggtggccggttt
gccacctcggatctcaacgatctctaccgccgggttatcaaccgcaacaaccggctcaag
cgtctgctggagctggatgctccggatatcatcatccgcaatgaaaaacggatgctccag
gaagcggtggatgtcctctttgacaacggccggcgcggccggaccatcaccggtcccaac
aagcgtccgctgaaatcgctctccgacatgctcaagggcaagcagggccgcttccggcag
aatctgctcggtaagcgggtcgattactcgggtcgttcggtcatcgtcgtcggcccacat
ctgcgattgcaccagtgcggattgccgaagaagatggcgctggagctgttcaagcccttt
atctataacaagcttgaaaccctgggatacgtcaccaccattaagagtgcccggaagatg
gtggaaaaggggtccaaggaagtatgggatgttctcgatgagatcgtccgcgaatatccg
gtcattctcaaccgggctcctacccttcatcgcctcggtatgcaggcctttgaggttgtg
ctggtggagggtaaggccatccagctccatccgctggtctgcgtagccttcaatgccgac
tttgacggcgaccagatggccgtccatgtgccgctttccgtcgaggcccaggtggagtcg
cgggtcctgatgatgtccaccaacaacatcctctcgcccgccaacggcggtcccatcatt
attccgacccaggatatcgttcttggtctctattacatgacccgggaacgctacggcgtt
gtcggcgagggctccatgttcggctcggtagccgaggcccgcatggcctacgatcatggg
gcggccgatctccaggccagggtgaaggtccggatcgacggcaagatggtggacaccacc
atcggtcgtatcctggtcagcgaactgctgcctgagtcgatccccttttccctggtcaac
aaggagctgtcgaaaaaggagctggccttcctcatcgactacacctaccgtcacgccggt
accaaggacacggttatcctcgcagaccggctcaaggatcttggctacgaatacgccacc
cgggccggtatctccatctgcatcaacgacatgaagattccggtcaagaaggaagatttt
gtcgaagagtccgagcgggccgcggccgaggtcgagcagcagtactccgatggtctgatc
accgacggtgagaagtacaacaagatcgtcgatatctggtccaaggccaccgacaggatc
accaaggagatgatggatgagatggcggtggaatatgtccaggattccgagggcaaggtc
cgggagatcaagagtttcaactcggtcttcatcatggctgattccggtgcccgtggttcc
aaggaccagattcgccagctggccggtatgcgtggtctgatggccaagccttccggcgag
atcatcgagaccccgatcaaggccaacttccgggaaggtcttaatgtcctggagtacttc
atctctacccacggagcccggaaaggtctggccgacacggcgctcaagactgctaactcc
gggtaccttaccaggcggttggtggatgtggcccaggattccaccatcgttgagaaggac
tgcggtaccatgcgcggtatgctggccgaaccactcatagagggtggcgaggtcatcgtc
cgcattggcgatcgtatcctcggccgggtggccctggaagatgtggtggatccctattca
ggggagatcctggtcgctgccgatgaagagatcaccgaggaaaaggtggagaagatcgag
gccgccggtgtggaccaggtgatgatccgttcggttctgacctgtgaatccaagcgcggg
gtctgcgccatgtgctacggtcgggatctggggcgtggccatatggtcaatattggcgag
gccgtgggtatcatcgccgcccagtccatcggtgagcccggaacccagctgaccatgcgg
accttccatatcggtggtaccgccagccggtcggtggagcaggccgaggttcgcacccag
cggggtggcacggtcaagtacaagaacctgcacacggtcaccaatgccgaaggccttgat
gtagtgatgaatcgcaatgcggagatcactgtccttgacgacaagggtgtggaccgtgaa
cgttttccggtgccttacggcgccgagctcaaggtcaaggacggggccacggtggagcct
ggagcggttattgccgactgggatgcctttgccattcccattgtcgccgaggttggcggc
aagatcaagtacggggacgtgatcgagggcgagaccatgcaggagcgggttgaccaggtc
acgggcaaggcctccaaggtgatcacttcggccacatcctcgcgccagctcaatccgcgg
atcaccatcaaggatgagcgcggccggaccaagaagctgcccggtggcgatctcccggcc
cgttattccctgccggtggggtcgatcatcacggttgacgaaggggtggagatcaccccg
ggtaccattgttgccaagatcccacgggaaaccaccaagaccaaggacatcaccggtggt
cttccccgggtcgccgagctgttcgaggtccgtaagcccaaggaacaggccatcatcacc
gagatcgacggtcgggtcagcttcggcaaggacctcaagggtaagcgtcgggtcatcgtc
accccggaaaccggtgaacccaaggagtatctcatccccaagggcaagcacatcaccgtc
catgagggagactatgtcaaggctggtgagccgctcatggaaggctccatcctgcccaac
gatattctccgggttctgggggccgaggccctggcccgctttctggtcaacgagatccag
gaggtctaccggctccagggtgtccggatcaatgacaagcatatcgaggtcattgtccgg
cagatgctcaagcgggtaaagatcaccgaccccggtgactccaggttcatgctcgacgag
caggtggagtggtggaagttccgggaggaaaacgagcggctcatggccgaaggaagacag
ccggcctcggccgaaccgctgcttctcggcgtcaccagggcctcgttgtccaccgattcc
ttcatctcggctgcctcgttccaggagacaaccaaggtgctgaccaatgcagccatggcc
ggcaaggtcgattacctgaccgggctcaaggagaacgtgatcatgggtcggctgatttcc
gccggtaccggcctggaaaggtacaggctgcgcaaggaaggaaagaagtaa
DBGET
integrated database retrieval system
