Desulfolithobacter dissulfuricans: GF1_25470
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Entry
GF1_25470 CDS
T08652
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddu
Desulfolithobacter dissulfuricans
Pathway
ddu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GF1_25470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddu03019
]
GF1_25470
03009 Ribosome biogenesis [BR:
ddu03009
]
GF1_25470
Enzymes [BR:
ddu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GF1_25470
Messenger RNA biogenesis [BR:
ddu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GF1_25470
Ribosome biogenesis [BR:
ddu03009
]
Prokaryotic type
rRNA helicases
GF1_25470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RRM_5
Cas3-like_C_2
AAA_22
SBF_like
Motif
Other DBs
NCBI-ProteinID:
BCO10171
UniProt:
A0A915U2I9
LinkDB
All DBs
Position
complement(2829920..2831632)
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AA seq
570 aa
AA seq
DB search
MNLFTEIGVLPEIAAVLTELGYTAPTPIQEKVIPALLTGDTDRICLAQTGTGKTAAFGIP
LVQLVDVQNRQPQALVLCPTRELCLQVATDLSRFGRKLNGIKVQPVYGGAPMGQQRDGLR
RGAQIVVATPGRLRDLLDRGAVSFAMISRVVLDEADEMLQMGFLDEITSILKAIPVARQT
LLFSATMSSVVRKVAGRYMQEPSEILIGPRNGGVDTIRHQFCVIASHNRYAALQRLIASR
ADMYGIVFCRTKNDTRTTAEALVGDGLRAEALHGDLSQSQREEVMRRFRARSVRILVATD
VAARGVDIADLNHVIHYNLPTDTASYNHRSGRTGRAGRQGVSIALVLGHERNRIRNLERS
LGRVFEQQQVPTGRDICDQRIHALLDTLRDMETPDHLAPYLDTISAKLAGLDREELVRRL
LALQFKDVLETYGKAPDLNKLGSTGPGKGQRAGTQRSTGRGTGTRFTGFKINIGARHGMN
PQRLIGMFNANRETRNIDIGRIKVRGDSAMVEADSRFADVIVTTLSGQIVEGKKIQVTIS
TDSRGRTTRPARPGRKKQGTIVRRRRVVSS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtttacagaaatcggtgtcctgccggaaatcgctgccgttcttaccgaactc
ggctacaccgcacccaccccgatccaggaaaaggtcattccggccctgctcaccggggac
accgatcgcatctgtctggcccagaccgggaccggcaagaccgccgcctttggcattccc
ctggtccagctggtggatgtgcagaaccgccagccccaggccctggttctctgtccgacc
cgggaactttgtctgcaggtggccaccgatctgtcccgttttggccgcaagctcaatggc
ataaaggtgcaaccggtctacggtggcgcgcccatgggccagcagcgcgatggtctgcgc
cgcggcgctcagattgtggttgccacccccggacggctgcgggacctgcttgaccggggc
gcggtttcctttgccatgatcagccgggtggtcctggacgaagcggatgaaatgctgcag
atgggttttctggacgagattacctccatcctcaaggccataccggtggctcgccagacc
ctgcttttctctgccaccatgtcatcggtggtccgcaaggtggctggtcgctacatgcag
gagccctcggaaatactcatcggaccccgtaacggcggggtggacaccatccgccatcag
ttctgcgtcatcgcctcccataaccgctatgcggcccttcagcggctcatcgccagtcgg
gccgatatgtacggcatcgttttctgccggaccaagaacgacacccggaccacggccgaa
gcgctggtcggtgacgggctgcgggccgaagccctgcatggtgacctgtcccagtcccag
agggaagaggtgatgcgccggttccgggcccggagcgtgcgtattctggtggccaccgat
gtggcggcccggggggttgatattgccgacctgaaccatgtgatccattacaatctgccc
accgacaccgcctcctacaaccatcgcagcggccggaccggtcgggccgggcggcagggg
gtttcaatcgcccttgtcctgggccatgaaaggaaccggatcaggaacctggagcgatcg
ctgggacgtgtttttgaacagcagcaggtaccgacgggacgagacatctgcgaccagcgg
atccacgccttgctggacactctgcgcgatatggaaaccccggaccatctcgctccctac
ctggacactatatcggcaaaactcgctggccttgaccgggaggaactggtcaggcgcctt
ctggctctgcagttcaaggacgttctggaaacctatggcaaggctccggacctgaacaag
ctcggctccactggtcccggaaaggggcagcgagccggtacccaacgctccacgggccgg
ggaaccggtacccgttttaccgggttcaagatcaatataggggccaggcatggcatgaac
cctcagcggctcatcggcatgttcaatgccaaccgggagaccagaaatatcgatatcggc
cggatcaaagttcggggtgacagtgccatggtcgaggcggacagtcggtttgccgatgtt
atcgttaccaccctgagtggtcagatcgtcgaggggaagaagatccaggtcaccatcagt
accgattcccgtggacgcaccaccaggccggcccggcccggcaggaaaaaacagggcacc
atcgtcaggcgccgtcgcgtggtcagttcctga
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