Candidatus Desulfobacillus denitrificans: DSYM_16120
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Entry
DSYM_16120 CDS
T07109
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ddz
Candidatus Desulfobacillus denitrificans
Pathway
ddz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSYM_16120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddz03019
]
DSYM_16120
03009 Ribosome biogenesis [BR:
ddz03009
]
DSYM_16120
Enzymes [BR:
ddz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DSYM_16120
Messenger RNA biogenesis [BR:
ddz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSYM_16120
Ribosome biogenesis [BR:
ddz03009
]
Prokaryotic type
rRNA processing factors
DSYM_16120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
BBO20913
UniProt:
A0A809QZT9
LinkDB
All DBs
Position
1609252..1611900
Genome browser
AA seq
882 aa
AA seq
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MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGAE
RHGFLPFKEVSRAYFRDGVEPNRATIKEALKEGQELIVQVDKDERGNKGAALTTFISLAG
RYLVLMPNNPRGGGVSRRIEGEDRNELREAMDQLDVPQGMSLIARTAGIGRTAEELQWDL
NYLMQLWRAIEGAAGSQKGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQAQQFM
SHVMPGNVARVKRYRDDVPLFSRFQIEHQIETAFGRQVTLPSGGAIVVDHTEALVAVDVN
SGRATRGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESPRAQREVENRLRD
ALHYDRARVQTGKISRFGLLELSRQRLRPALAEMTYIPCPRCTGTGHIRSTESAALHILR
ILEEEAMKENTGAVHVQIPVDVATFLLNEKRDDIRTIELRHKVNLVLIPNIHLETPAHEI
VRLRHDQLNQEEQVLPSYKMVEAPPTEAYQPPSAQTESRPSRPEAAVKGITPAQPAPVVE
PKPSPAPQTVRSAPAVEPGIIEKIFGWFRGNRTVEPTPAVKAEAPARREQTREGRGGRGR
DRGERGRQEPRDRAEQRQRGQQAPRQDQDGRGGERRPRQERGERPERQGQEQPRQQRPQR
PQEQRTPQPQPTESPIVAVTGALESPKPGAQPEQQEERRGRRGRRGRSRDRGERRPEEQA
TETAPAVTETNTDAIPAPVSAGNGQMAPSAEQQTAAPVAEMAPAPVPLPAIEVAQPEPAS
APVEPAFAPVPVAVTLVEDDAAASAPATTDEATPAPVAMPAAVKPQIDLSVALQESGLVM
VETSRDKTTGPAAVETEVRLGRKPKPVIPAGNEPMMQVETRK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcaatgcgacgcaggccgaggaactccgcgtcgcgatcgtcgatggccagaaa
ctgatcgacctcgacatcgaatcggccgccaaggaacaacgcaagagcaacatctacaag
gccgtcatcacccgcatcgagcccagcctcgaagcggccttcgtcgattacggcgccgaa
cgccacggcttccttcccttcaaggaagtctcgcgcgcctacttccgtgacggcgtcgag
ccgaaccgcgccaccatcaaggaagccctcaaggaaggccaggaactcatcgtccaggtc
gacaaggacgagcgcggcaacaagggcgcggccctgaccaccttcatttccctggccggc
cgctatctggtcctgatgccgaacaacccgcgcgggggcggcgtctcgcgccgtatcgag
ggcgaggaccgcaacgagctgcgcgaggccatggaccagctcgatgtgccgcagggcatg
agtctgatcgcccgcaccgccggcatcggccgcaccgccgaggaactgcagtgggatctc
aattacctgatgcaattgtggcgcgccatcgagggcgccgccggcagtcagaagggccct
ttcctcatctaccaggagggtagcctggtgatccgcgccatccgcgactatttccagccg
gatatcggcgagatcctcatcgacaccgacgacatcttcgagcaggcgcaacagttcatg
agccacgtcatgcccggcaacgtggcgcgcgtgaagcgctaccgcgatgacgtgccgctc
ttctcgcgcttccagatcgagcaccagatcgaaaccgcctttggccgccaggtcaccctg
ccctccggcggcgccatcgtggtggatcataccgaggcgctggtcgccgtcgacgtcaac
tcgggacgcgccacccgcggcgccgacatcgaggagaccgcgctgcgcaccaacctcgag
gcggccgacgagatcgcccgccagctgcgcctgcgcgacctgggcggcctcatcgtcatc
gacttcatcgacatggaaagcccgcgcgcccagcgcgaggtggagaaccgtcttcgcgat
gccctgcactacgaccgcgcccgcgtccagaccggcaagatctcacgcttcggcctgctc
gagctgtcgcgccagcgcctgcgcccggccctggccgaaatgacctacatcccctgcccg
cgctgcaccggcacgggccacattcgcagcaccgagtcggccgccctgcacatcctgcgc
atcctcgaggaggaagcgatgaaggaaaacaccggcgcggtgcatgtgcagattcccgtc
gatgtcgccaccttcctgcttaacgagaagcgcgacgacatccgcactatcgaactgcgc
cacaaggtgaatctcgttctgatcccgaacatccacctcgaaacgccggcccatgagatc
gtgcgtctgcgccacgaccagttgaaccaggaagaacaggtcctgccgagctacaagatg
gtcgaggcgccgccgacggaagcctaccagccgccctcggcgcagaccgagtcccgtccg
agccgccccgaagccgccgtgaagggcattaccccggcacagcccgcccccgttgtcgaa
ccgaagccgtctccggcgccgcaaaccgtcaggtctgcccctgccgtcgagcctggcatc
atcgaaaagatcttcggctggttccgcggcaaccgcacagtcgaaccgacgccagccgtc
aaggccgaggcacccgcccgccgcgagcaaactcgcgaggggcgcggcgggcgcggacgc
gaccgcggcgaacgcgggcgccaggagccgcgcgaccgcgcggaacagcgtcagcgaggc
cagcaggcgccccgccaggatcaggatggtcgcggcggcgagcgccgcccgcgtcaggag
cgcggtgagcgtcccgaacgacagggtcaggagcagccgcgccagcagcgtccgcaacgc
ccgcaggaacagcgcacgccgcagcctcagccgactgaatcgccgattgtggccgtcacc
ggcgcgctcgagtcgcccaagccgggcgcccagccggagcagcaggaggagcgtcgcgga
cgccgcggacgtcgcggacgcagccgcgatcgaggcgagcgccgcccggaagaacaggcc
accgaaacggcaccggccgtgacggaaacgaacacggatgccattcccgctcccgtctcc
gccggtaacgggcagatggctccctccgccgagcagcaaaccgctgcgcccgttgccgaa
atggcgccggccccggtaccgctgcccgctatcgaagttgcccaacccgagccagccagc
gccccggtcgagccggccttcgcacccgtcccggtagccgtaacgctggtcgaagacgat
gctgccgccagcgccccggcaacgaccgatgaagcgacgcccgccccggtcgccatgccg
gcagccgtcaagccgcagattgacctctccgtggccttgcaggaaagcggcctggtcatg
gtggaaaccagccgcgacaagacgactgggccggctgccgtggaaaccgaagtccggctc
gggcgcaagcccaagcccgtcatcccggccggcaacgaaccgatgatgcaggtggaaacc
cgcaaatag
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