Candidatus Desulfobacillus denitrificans: DSYM_19610
Help
Entry
DSYM_19610 CDS
T07109
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ddz
Candidatus Desulfobacillus denitrificans
Pathway
ddz03410
Base excision repair
ddz03430
Mismatch repair
ddz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSYM_19610
03430 Mismatch repair
DSYM_19610
03440 Homologous recombination
DSYM_19610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddz03400
]
DSYM_19610
DNA repair and recombination proteins [BR:
ddz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSYM_19610
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSYM_19610
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSYM_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BBO21262
UniProt:
A0A809RNW1
LinkDB
All DBs
Position
1986151..1987842
Genome browser
AA seq
563 aa
AA seq
DB search
MTRILTRKTPQQARERLEYAGVHPLLARLYAARGIARAEELDTALAALLDPAQLKGAAEA
AALLADAIAAKRRLLIVADYDCDGATACAVGVRALRAFGADVSYLVPNRFDYGYGLTPEV
VRLASERKPDIIITVDNGIASVEGVAEAKRLGISTLITDHHLPGDELPEADVIVNPNQPG
CAFPSKAIAGVGVMFYVMLALRAELRKRGAFNASPEPNLAALLDLVALGTVADVVKLDRN
NRILVAQGLARIRQSKLQPGLRALFRVAGREAERAGTFDLGFALGPRLNAAGRLADMSLG
IECLVTDDLGRALNIAQQLDQLNRERRTIETDMQDQAMAILDGIEAAERASLALYDPAWH
QGVVGILASRVKDKLHRPVIAFASGNEGELKGSGRSIPGLHLRDALDLVSKRAPGLLLRF
GGHAAAAGLTLREADLERFESLFEETVRGLVSPADLTRTLETDGALEAGWMSLESARMLE
GEIWGQGFPAPLFSDEFEVDKQRILKDRHLKLTLRKGAARFEAIQFNFAESVPPNVRAAY
RLAVNEFNGLASVQLVLEHIEPA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcatcctgacgcgcaagacgccgcagcaggcgcgcgagcgcctcgaatacgcc
ggcgtgcacccgttgctggcgcgcctctacgcggcgcgcggcatcgcgcgcgcggaggag
ctcgacacggcgctcgccgccctgctcgatccggcgcagctgaagggcgccgccgaggcg
gcggcgctgctggccgacgccatcgcggcgaagcggcgcctgctcatcgtcgccgactac
gactgcgacggcgccaccgcctgcgcggtgggcgtgcgcgccctgcgtgccttcggcgcc
gacgtgtcgtacctcgtgcccaaccgcttcgactacggctacggcctgacgccggaagtg
gttcgcctcgcatccgagcgcaagcccgacatcatcatcaccgtcgacaacggcatcgcc
agcgtcgagggcgtcgccgaggcaaagcggctcggcatcagtacgctcatcaccgaccac
cacctgcccggcgacgaattgcctgaagccgacgtcatcgtcaacccgaaccagcccggc
tgcgccttcccgagcaaggccatcgccggcgtcggcgtgatgttctacgtcatgctggcg
ctgcgcgccgagctgcgcaagcgcggcgccttcaacgccagccccgagcccaacctcgcc
gccctgctcgacctcgtcgccctcggcaccgtggccgacgtggtgaagctcgaccgcaac
aaccgcatcctcgtcgcgcagggcctcgcccgcatccgtcagagcaagctgcagccgggc
ctgcgcgccctcttccgcgtcgccggacgcgaagccgaacgcgccggcaccttcgacctc
ggcttcgcgctggggccgcgcctcaacgcggcgggacggctcgccgacatgtcgctcggc
atcgagtgcctcgtcaccgacgacctcggccgcgccctcaacatcgcccagcagctcgac
cagctgaaccgcgagcggcgcacgatcgagacggacatgcaggaccaggccatggccatc
ctcgacggcatcgaagccgccgaacgcgccagcctggccctctacgatcccgcctggcac
cagggcgtcgtcggcatcctcgcctcgcgcgtcaaggacaagctgcaccgcccggtgatc
gccttcgccagcggcaacgaaggcgagctgaagggctccggccgctcgattcccggcctg
cacctgcgcgacgccctcgacctggtgtcgaagcgcgcgcccggcctgctgctgcgcttc
ggcggccacgccgccgcggcgggactgactttgcgcgaggcggacctggaacgcttcgaa
tcgctcttcgaggaaacggtgcgcggactggtcagccccgccgacctgacgcgcaccctc
gaaaccgacggcgcgctcgaggccggctggatgtcgctggaaagcgcgcgcatgctggaa
ggggaaatctggggccagggcttcccggccccgctgttcagcgacgagttcgaggtcgac
aagcagcgcatcctcaaggaccgccacctcaagctcaccctgcgcaagggcgccgcccgc
ttcgaggccatccagttcaacttcgccgagagcgtgccccccaacgtgcgcgccgcctac
cgcctggcggtcaacgaattcaacggcctcgccagcgtgcagctggtgctggagcacatc
gagccggcgtga
DBGET
integrated database retrieval system
