Candidatus Desulfobacillus denitrificans: DSYM_25540
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Entry
DSYM_25540 CDS
T07109
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ddz
Candidatus Desulfobacillus denitrificans
Pathway
ddz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSYM_25540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddz03019
]
DSYM_25540
Enzymes [BR:
ddz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSYM_25540
Messenger RNA biogenesis [BR:
ddz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSYM_25540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
UTP25_NTPase-like
UvrD-helicase
P-loop_SecA
HI1480
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBO21855
UniProt:
A0A809RBY4
LinkDB
All DBs
Position
2606621..2607958
Genome browser
AA seq
445 aa
AA seq
DB search
MQFTELGLRAEILRAIAEEGYTEPTPIQAKAIPVVLAGRDLMAAAQTGTGKTAGFTLPIL
QLLSTRQAAQRGKPRVLVLTPTRELAAQVEESVRTYGHFLPLKSTLIFGGVGMGPQIKAL
KAGVDILVATPGRLLDHVGQKTADLSAVEILVLDEADRMLDMGFIHDIRKVLALVPQQKQ
TLLFSATFSDEIRGLANGLLRDPQLVEVAPRNATADLVSQRVYPVDKARKRELLIKLIDD
HHWHQVLVFTRTKHGANTLAEKLDKAGISAAAIHGNKSQNARTRALADFKSLKLNVLVAT
DIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGASGHAVSLVCVDEHGLLRDIER
LLKKPIEKIVLPGFEPDPSIRPEPIENGQRAQGQRPGQRGGQPQRGQRPGNKPAKAALPR
PGQPPQRGAPARSNAARHHSGSRHR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaccgaactcggcctgcgcgccgaaatccttcgcgccatcgccgaagaaggc
tacaccgagccgacgccgatccaggccaaggcgattcccgtcgtgctcgccggccgcgac
ctgatggccgccgcccagaccggcaccggcaagaccgccggcttcaccctgcccatcctg
cagctgctgagcacgcggcaggcagcgcagcgcggcaagccgcgcgtgctggtgctgacg
ccgacgcgcgaactcgccgcccaggtcgaggagagcgtgcgcacctacggccattttctg
ccgctgaagtcgacgctgatcttcggcggcgtcggcatgggcccgcagatcaaggcgctg
aaggccggcgtcgacatcctggtggcgaccccgggccgcctgctcgaccacgtcggccag
aagaccgccgacctctccgccgtcgagatcctcgtgctggacgaggccgaccgcatgctc
gacatgggcttcatccacgacatccgcaaggttctcgcgctggtgccgcagcagaagcag
acgctgctcttctccgccaccttctccgacgagatccgcggcctcgccaacggcctgctg
cgcgacccgcagctggtcgaggtggcgccgcgcaacgccaccgccgacctggtcagccag
cgcgtctatcccgtcgacaaggcgcgcaagcgcgagctgctgatcaagctcatcgacgac
caccactggcaccaggtgctggtgttcacgcgcaccaagcacggcgccaacaccctggcc
gagaagctcgacaaggccggcatcagcgcggcggcgatccacggcaacaagagccagaac
gcgcgcacgcgtgcgctggccgacttcaagagcctgaaattgaacgtgctggtcgccacc
gacatcgccgcgcgcggcctggacatcgaccagctgccgcacgtggtgaacttcgagctg
cccaacgtgcctgaggattacgtgcaccgcatcggccgcaccggccgcgccggcgccagc
ggccatgccgtgtcgctggtctgcgtggacgagcacggcctgctgcgcgacatcgagcgc
ctgctgaagaagccgatcgagaagatcgtgctgcccggcttcgaacccgacccgagcatc
cgcccggaaccgatcgagaacggccagcgcgcgcaaggacaacgcccgggccagcgcggc
ggccagccgcagcggggccagcgcccgggcaacaagccggccaaggccgcgttgccccgg
ccgggccagccgccgcagcgcggcgcgcccgcgcgcagcaatgccgcccggcatcattcc
ggctcgcgccaccgctga
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