Candidatus Desulfobacillus denitrificans: DSYM_26640
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Entry
DSYM_26640 CDS
T07109
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddz
Candidatus Desulfobacillus denitrificans
Pathway
ddz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSYM_26640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddz03021
]
DSYM_26640
03400 DNA repair and recombination proteins [BR:
ddz03400
]
DSYM_26640
Enzymes [BR:
ddz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSYM_26640
Transcription machinery [BR:
ddz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSYM_26640
DNA repair and recombination proteins [BR:
ddz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSYM_26640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BBO21965
UniProt:
A0A809RC87
LinkDB
All DBs
Position
complement(2705096..2709292)
Genome browser
AA seq
1398 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAITIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDAGMTPLNRAQLLSEDDYLAKVEEYGDDFAAVM
GAEGIRELLRTLDVHHEIEELRKELETTGSEAKIKKIAKRLKVLEAFQQSGIKPDWMILE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFNKLELLGLATTIKAAKKLVEQEVPEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLSSNNILSPANGDPIIVPSQDIVLGLYYATRERINARGEGMVFSDIAEVKRAYESG
QADLHAKVLARIREYEIGEEGEKREKITRYETTIGRAILSEILPTGLPFSIINKPLKKKE
ISRLINACFRRCGLKETVIFADKLMQAGFGLATRAGISISIGDMLVPPQKHEIISAAERE
VKEIEKQYTSGLVTDGERYNKVVDIWGRAGDQVAKAMMEQLSHQEVVDRSGKKVAQESLN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEVPITTNFREGLNVQQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTTNGFAMKALVEGGEVVEALRERVL
GRVIISDVLHPETQDVLFPAGTLLDEDAVELIETLGVDEVRVRTPLSCETRYGLCAKCYG
RDLGRGMLVNSGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASHVEAKSAGTVRF
TQNMRYVTNPKGEKVVIARSAEVLVTDDHGRERERHKVPYGAMLAVDDGKHARAGTQLAT
WDPHTRPIVTEYAGTVKFENVEEGVTVTKQIDEVTGLSTLVVIDPKRKAGAAAKGLRPQV
KLLTPSGEEVKIHSTDHSVTITFQVGSIITVKDGQEASVGDILARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITEPDGTAHEYLIPKDKHVMAH
DGQVVNRGEVIVDGPADPHDILRLKGVEELARYIIDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVVITDPGDTHFIREEQVERAEVLDENDKATNQGRRPAEYQYMLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRTRRMQAVGEDIA
IGRELEEEGAAQEDPQAS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactactcgatcttttcaagcaggtaactcaggaagaggaattcgacgccatc
accattggcctcgcctctcccgagaagatccgctcctggtcctacggcgaagtgaaaaag
ccggagaccatcaactaccgcaccttcaagccggagcgtgacggccttttctgcgccaag
attttcggcccggtaaaggattacgagtgcctttgcggcaaatataaacgactcaagcac
cgcggtgtcatctgcgagaagtgcggtgtcgaggtcacgctgtcgaaggttcggcgcgag
cgtatgggccacatcgagctggcttcgccggttgcccacatctggtttctgaaaagcctg
cctagccgcttgggcatggtgctcgacatgactctacgcgatatcgaacgcgttctgtat
tttgaagcctatgtcgtggtcgatgccgggatgacgccgcttaatcgcgcccagttgctg
tccgaggacgactatctggccaaggtcgaggaatacggggacgattttgctgccgtgatg
ggtgctgaggggatccgcgaactgttgcgtaccctcgatgtgcaccatgagatcgaagag
ttgcgaaaggaactcgagaccaccggttccgaagccaagatcaagaaaatcgccaagcgc
ctgaaggtgctggaagccttccagcagtctggcatcaagccggactggatgatcctcgaa
gtgctgcccgtgctgccacccgacttgcgcccactggtgccgttggacggcggtcgtttc
gccacatcggacctgaacgatctctatcgccgtgttattaaccgcaacaatcgcctgaag
cgcctcttggaactgaaggcgccagagatcatcgtgcgcaacgagaaacgcatgctgcag
gaggccgtcgattcgctgctcgacaatggtcgtcgtggcaaggccatgaccggggccaac
aagcgcccgctgaagtcgcttgccgacatgatcaagggcaagggcggtcgtttccgccag
aacctgctgggcaagcgtgtggattactccggccgctccgtcatcgtggtcggcccgcag
ctgaaattgcaccagtgcggcctgccgaagaagatggcccttgagctgttcaagcctttc
attttcaacaaactggaactgctgggactggcgaccacgatcaaggcggccaagaaactg
gtcgagcaggaagtgccggaggtgtgggatatcctcgaggaagtgatccgcgagcaccct
gtaatgctcaaccgggcaccaacactgcatcgcctgggcattcaggccttcgaaccaact
ctcatcgagggcaaggccatccaactgcatccgctcgtgtgtgtggccttcaatgccgac
ttcgacggagatcagatggccgtgcatgtgccgttatccctggaggcgcagatggaggcg
aggaccttgatgctgtcctccaacaacatcctgtcgccggccaacggcgatccgatcatc
gtgccgtcacaggacatcgtgctcggcctctactatgctacacgggagcgcatcaatgca
cgcggggaaggcatggtgttctcggacatcgccgaggtcaagcgcgcctacgaatcgggc
caggccgacctgcacgccaaggttctggcgcgcataagggaatatgagatcggtgaggag
ggcgagaagcgcgagaagataacgcgctacgagaccaccatcggccgtgccatcctgtcc
gaaatcctgccgaccggactgcctttctccatcatcaacaagccgctcaagaaaaaggag
atatcgcgtctcatcaacgcctgcttccgtcgctgcggcctgaaggagactgtcatcttc
gccgacaagctgatgcaagccggctttggattggctacgcgagccggcatctcgatttcg
atcggggacatgctggtaccgccgcagaagcacgagatcatttccgcagccgagcgcgag
gtgaaggaaatcgagaagcaatatacttcgggcctcgttacggacggcgagcgctataac
aaagttgtggatatctggggccgcgccggtgatcaggtcgctaaggccatgatggaacag
ctttcccaccaggaagttgtcgaccgcagcggcaagaaggtggcgcaggaatctctgaac
tcgatctacatgatggccgattcgggtgcccgcggctccgccgcccagatccgccagctg
gccggtatgcgcggcctgatggccaagccggatggctccatcatcgaggtgccgatcacc
acgaatttccgcgaaggccttaacgtccaacagtacttcatctcaacccacggcgcgcgc
aaaggcttggccgatactgcactgaagacggctaactctggctatctgactcgccgcttg
gtggacgtcacgcaggacttggtggtgaccgaggacgattgcgggactaccaacggcttt
gctatgaaggccctcgtcgagggcggcgaggtggttgaagcactacgtgagcgcgttctc
gggcgtgtcattatctccgatgtcctccatccagagacccaggatgtgctgtttccggcc
ggcaccctgcttgacgaagatgccgtcgagctcattgagacgctgggagtcgatgaagtg
cgcgtgcgcaccccgttgagctgtgagacacgctatggcctgtgcgctaagtgctacggc
cgcgatctcggtcggggcatgctggtcaattcgggggaggcggttggtgtcatcgccgcc
caatcgatcggcgagccgggcacccagctcaccatgcgcactttccacgtcggtggcgcc
gcttcccgcgcggcggctgcctcgcatgtcgaggccaagtcggccggcacggtacgcttt
acgcagaacatgcgctatgtgaccaacccgaaaggcgaaaaggtggtcatcgcccgttcc
gcggaagtgctggtgaccgacgaccacggtcgcgagcgggagcgtcacaaggtgccctac
ggcgccatgctggctgtcgatgatggcaaacacgcccgcgctggcacccaacttgcaacc
tgggatccgcatactcgtccgatcgtcacggaatacgccggaacggtgaagttcgagaac
gtcgaggaaggcgtcaccgtgaccaagcaaatcgacgaggtgaccggcctgtcgactctc
gtcgtcattgacccgaaacgtaaggccggcgcggcggcaaaagggttgcggcctcaagtc
aaattgctgacgccttcaggcgaggaagtgaagatccatagcacggaccattccgtgacg
atcaccttccaggtgggttccatcatcacagtgaaggacggacaagaagccagtgtcggc
gacatcctagcgcgcatcccccaggaatcctcgaagacccgcgatattactggcggcttg
ccgcgggtggccgagctcttcgaagcccgttcgccgaaggatgccggcatgttggccgag
gtgaccggaacggtgtccttcggcaaagacaccaagggcaagcaacgcttggtgatcacc
gagccggatggtacggcacacgaatatcttataccaaaggacaagcacgtcatggcccac
gacggccaggttgtgaaccgcggggaagtcatcgtagatggaccggccgacccgcacgac
atcctgcgtctgaagggggtcgaagagttggcccgttacataatcgatgaagtacaggac
gtataccgtctgcagggcgtgaagatcaatgacaagcacattgaggtgatcgttcgtcag
atgttgcgtcgggtcgtcatcacagaccctggtgacacccacttcatccgcgaggagcag
gtggagcgcgctgaagtgctggacgagaacgacaaggccaccaaccagggcaggcgtccg
gccgaatatcagtacatgcttctcggcattaccaaggcctcgttgtcgacagactccttc
atttcggcggcatcattccaagagacaacacgcgtactgaccgaagcggccattatgggc
aagcgtgacgaattgcgtgggttgaaggaaaacgtcattgttggccgcctgattcctgct
ggtaccggcttggcctatcatcgcacccggcgtatgcaagctgtgggcgaggatatcgcc
atcggacgcgaactggaggaggagggggcagcccaagaggacccccaagccagttga
DBGET
integrated database retrieval system
