Devosia ginsengisoli: FPZ08_04770
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Entry
FPZ08_04770 CDS
T06120
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dea
Devosia ginsengisoli
Pathway
dea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPZ08_04770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dea03400
]
FPZ08_04770 (mfd)
Enzymes [BR:
dea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPZ08_04770 (mfd)
DNA repair and recombination proteins [BR:
dea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPZ08_04770 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
RecG_dom3_C
AAA_25
ERCC3_RAD25_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDZ10117
UniProt:
A0A5B8LP46
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All DBs
Position
977701..981186
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AA seq
1161 aa
AA seq
DB search
MNEIVAQRPTRTIANVPDGMQPMVLARLVQQRIEAAPEDAASLVFVARDGRRMQRMADIL
GAMLPGHTILTLPAWDSLPYDRVSPNNVTIAARMNTLAALTSGAKGAVVLTAVNALIQKL
PPRDVVETMSFSAATGRFVDSDKLIAWAANNGYLRVPTVRESGEYAVRGGLVDLFPASAE
APLRFDFFGSQLESIRTFDPDSQRTTGQLKRVDLTPMSEVVLTETTIRRFRQNYTAAFGG
NTVDDTLYASVSGGSRYSGTEHWLPFFYEHLDTLADYVGDAPFVFDEQSVDAYAERVTQV
RDYYEARETARLAPVVAGAGAPYKPIAPELLYDVDAHPYALAGASVIQLSQFIAPETKAS
DDAGGHIAPSFAAERQATDTNLFQAVVDRLLAERRNGRRAIIACWSTGTRDRMVQVLKDH
GLTNPRLAENWRDAETTSAATTSLVVLPLETGFETKDLLVLSEQDILGERILRPQRKKKA
SDALTEAASLSAGDLVVHVDHGIGRFIGLKVIQAGGAPHECVELEYGGDTKLYLPVENIE
LLTRYGSDDGNVTLDKLGGVAWQAKKGKLKKRIREMAEQLIKIAAARLLTRADVVEINPG
AYDEFAARFPYEETEDQMAAIEAVFDDVTSGRVMDRLVCGDVGFGKTEVALRAAFAVALS
GKQVAVVVPTTLLSRQHFKTFSERFKGLPVRVRQASRMVPAAELKATKDGLADGQVDIVV
GTHALLSKTIKFKDLGLLIIDEEQHFGVGHKERLKELKANVHVLTLTATPIPRTLQLALT
GVRDLSLLATPPVDRLAIRTFISPFDALSVREALLREKYRGGQSFYVVPRIKDQHEIADF
LKAQVPEVSFVVANGQMAPGELDDIMNAFYDNKFDVLVATTIVESGLDIPNANTLIVHRA
DHFGLAQLYQIRGRIGRAKARAYALFTVPPDRKLTDTAERRLGVLQSLESLGAGFQLASH
DLDIRGAGNLLGDEQSGHIREVGYELYQAMLEEAVANLKSGEEEYEDRNEWSPQISLGMP
VMIPEHYVPDLQLRMQLYRRLGDLTDIRDIDAAGAELIDRFGPLPEEVEALLKVILVKAL
CRQANVEKVDAGPKGAVISLRNNEFPNPTALVRLVSDPANQVRIKPDQKLVFARNWPTPN
DRLKGAAAILSRLAKLVENAS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatcgtcgcccagcgcccgacgcgcaccattgccaatgtgcccgacggcatg
cagcccatggtgctggcgcggctggtgcagcagcgtatcgaggcggcgccggaggacgcg
gcgagcctggttttcgtggcgcgcgacgggcggcgcatgcagcgcatggccgacattctc
ggcgccatgctgccgggacatacgatattgacgctgccggcctgggacagcctgccctat
gaccgggtgtcgcccaacaatgtgaccattgccgcgcggatgaacacgctggcggcgctg
acgtcaggcgccaagggcgccgtggtgctgaccgcggtcaatgcgctgatccagaagctg
ccgccgcgtgacgtggtggagacgatgagcttttcggccgcgacgggccggttcgtcgat
agcgacaagctgatcgcctgggcggcgaataatggctatctgcgcgtgccgacggtgcgg
gagagtggcgaatatgcggtgcgtggcgggctggtggacctgtttccggccagcgccgaa
gcgcccctgcgcttcgactttttcggcagccagctcgaatcgatccgcactttcgatccg
gacagccagcggaccacgggccagctcaagcgggtcgacctgacgccgatgagcgaggtg
gtgctcaccgagacgaccattcgccggttccggcagaattacaccgcggcgttcggcggc
aatacggtcgatgacacgctctatgcctcggtcagcggcggttcgcgctattcgggcacc
gagcattggttgccgtttttctacgagcatctggatacgctggccgactatgtcggcgat
gcgccatttgtgttcgacgagcagtccgtggatgcctatgccgagcgcgtgacgcaggtg
cgcgactattacgaggcgcgcgaaacggcgcggctggcgcctgtcgtggcgggggcaggg
gcgccgtacaagcccattgccccggaactgctctatgacgtggatgcgcatccctatgcg
ctggcgggcgcgtcggtcatccagctcagccagttcatcgcgccggaaaccaaggcgagc
gacgatgccggcgggcatatcgcgcccagctttgcggccgagcggcaggcgaccgacacc
aatctgtttcaggccgtggtggatcggctgctggccgagcggcgtaacggccggcgggcg
atcatcgcctgctggagcacgggcacgcgcgaccgcatggtgcaggtgctgaaggatcac
ggcctgaccaatccgcggctggcggaaaactggcgtgatgccgagacgacaagcgccgcg
acgacctcgctggtggtgctgccgctggaaaccggctttgagacgaaagacctgctggtg
ctcagcgagcaggatattctgggcgagcgcatcctgcggccgcagcgcaagaagaaggcc
agcgatgccctgaccgaggcggcgagcctgtcggccggcgacctcgtggtgcatgtcgat
cacggtatcggccgcttcatcggcctcaaggtgatccaggccggtggggcaccgcatgaa
tgcgtcgagctggaatatggtggcgacaccaagctctacctgccggtggaaaatatcgag
ttgctgacccgctatggcagcgacgacggcaatgtgaccttggacaagctgggcggcgtg
gcctggcaggccaagaagggcaagctcaagaagcgcatccgcgaaatggcggagcagctc
atcaagatcgccgcggcgcgcctgctgacgcgggccgatgtggtcgagatcaatccgggc
gcctatgacgaatttgccgcgcgtttcccctatgaggagaccgaggaccagatggccgcc
atcgaggcggtgttcgacgatgtgacgtcgggccgcgtcatggaccggctggtctgcggc
gatgtgggcttcggcaagaccgaagtggcgctgcgcgcggcattcgccgtggcgctgtcg
ggcaagcaggtggctgtggtcgtgccgacgaccttgttgtctcgccagcatttcaagacg
ttctcggaacgcttcaagggcctgccggtgcgggtgcgccaggcgtcgcgcatggtgccg
gcggccgaactcaaggcgaccaaggacgggctggccgatgggcaggtcgatatcgtggtc
ggcacgcatgcgctgctgagcaagaccatcaagttcaaggatctgggcctgctgatcatc
gacgaagagcagcatttcggcgtgggccacaaggagcgcctcaaggagctcaaggccaat
gtgcatgtgctgacgctgacggcgacgccgattccacgcacgctgcaactggcgctgacc
ggggtgcgcgacctgagcctgctggcgacgccgccggtggaccggctggccatccgcacc
ttcatctcgccctttgacgcgctgtcggtgcgcgaggcgctgttgcgcgaaaaatatcgc
ggcgggcagagtttttatgtggtgccgcgcatcaaggatcagcacgagattgccgatttc
ctcaaggcgcaggtgcccgaagtcagcttcgtggtggccaatgggcagatggcgccgggc
gaactcgacgacatcatgaacgccttctacgacaacaagttcgacgtgctggtggcgacg
acgatcgtggaatcggggctggatattcccaatgccaatacgctgatcgtgcatcgcgcc
gaccatttcgggctggcgcagctttaccagatccgcggccgcatcggccgggccaaggcg
cgcgcctatgcgctgttcaccgttccacctgacagaaaattgaccgacacggccgaacgg
cggctgggcgtgctgcaatcgctggaaagcctgggggcaggtttccagctcgccagccat
gatctcgacatccgcggggcagggaacctgttgggcgacgaacagtcgggccatatccgc
gaagtgggctacgagctttaccaggccatgctggaagaggccgtggcgaacctgaagagc
ggcgaggaggaatacgaggatcgcaacgagtggagcccgcagatctcgctgggcatgccg
gtgatgatcccggaacactatgtgcccgacctgcaattgcgcatgcagctctatcggcgg
ctgggcgatctcaccgatatcagggatatcgacgctgctggcgcagaattgatcgaccgt
ttcgggccgctgccggaagaggtcgaggcgctgctcaaggtgatcctggtcaaggctttg
tgccggcaggccaatgtcgaaaaggtggatgccgggcccaagggtgcggtaatctcattg
cgcaacaacgagttccccaatcccacggctttggtgcggcttgtcagcgatccggccaac
caggttcgcatcaagcccgatcagaaactcgtgttcgcccgcaactggccgacgcccaat
gatcggctcaagggcgcggccgcaatcctgtcgcgcctggcaaaactggtagaaaatgca
tcctga
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