Devosia ginsengisoli: FPZ08_05075
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Entry
FPZ08_05075 CDS
T06120
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dea
Devosia ginsengisoli
Pathway
dea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ08_05075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dea03019
]
FPZ08_05075
03009 Ribosome biogenesis [BR:
dea03009
]
FPZ08_05075
Enzymes [BR:
dea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FPZ08_05075
Messenger RNA biogenesis [BR:
dea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ08_05075
Ribosome biogenesis [BR:
dea03009
]
Prokaryotic type
rRNA processing factors
FPZ08_05075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QDZ10171
UniProt:
A0A5B8LQ15
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All DBs
Position
complement(1036776..1039439)
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AA seq
887 aa
AA seq
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MATKRMLVDAIHPEETRIVVTSGNRLDEFDFESASRRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLRDEEAEEDHHDDGDENISLPEGVTEPDAE
ADPQETEDASHIEQAPANSEPVESIGGADALEEVPARRSSNNRRHYKIQEVIKRRQVMLV
QVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITSDLEVP
QGMGVILRTAGASRTKAEVKRDFEYLMRLWESVRSLTLKSQAPCLVYEEGSLIKRTIRDL
YNKDIDEVFVAGDNAYREAKDFMKMIMPSHAKNVKPYVEDQPLFSKYNIESQLDQMFSPT
VTLPSGGYIVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEAAEEVSRQLRLRDLAGL
IVIDFIDMMENRSNRAVERKLKDCLKDDRARIQVGRISHFGLMEMSRQRIRFGVVESSTH
KCPICDGTGLVRSTESLALMIMRHIEDHVLRRQGQSINVRVPVEVALYILNFKRETLTAL
EIRNQLSITITADGKLTGNQFAIEKGEARVMAYAEQRATEHVRVDSAIIEDADEDDVVEE
TEDEDAEERSSAADNGEGEGRRRRRRRRRGGADRGDDNGQRPQQQRAAQAPAVEAEGSDE
DGEGDEDENPARPSGEGQADGETRKRRRRGRRGGRRNRRDGEEGAERAPSPAGDDGLNVA
ETEAVAESLLVQDEIVAAEPAAVEPAPVEKPKRTRRKKVVETAESAPVDAAPVEATPEPV
AEAAAEAPAAEEKPKRKPRAPRKPKAETAEAAPAASVAEAAPVPVADAAPAPAAEAPAAA
PKPRRAKKELPAEGIVVSSSAPKAEAEGEPAEPKKKAGWWQRRLGLG
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaagagaatgctggtggatgccatccacccggaagaaacacggattgtcgtc
acatcgggtaacaggctcgacgaattcgacttcgaatcggcgtcccgccgccagttgcgg
gggaatatctacctcgccaaggttacgcgcgttgagccgtcgctgcaggccgcgttcgtg
gaatatggcggcaatcgccacggcttcctcgctttcagcgaaatccaccccgattactac
cagatcccggttgccgaccgcgaagccctgctgcgcgacgaagaggccgaggaagatcat
cacgacgacggtgacgagaacatctcgctgcccgagggggtgaccgagcccgacgccgaa
gccgatccgcaggagaccgaagacgccagccatatcgagcaggcgccggccaattccgag
ccggtggaatcgatcggtggcgccgatgcgctcgaggaagttcccgcgcgccgttccagc
aacaatcgccgtcactacaagatccaggaagtcatcaagcgccgccaggtgatgctggtg
caggtggtcaaggaagagcgcggcaacaagggcgcggcgctcaccacctatctgtcgctg
gccggccgctattccgtgctgatgccgaacaccgcccgtggcggcggcatttcgcgcaag
atcaccaatgctgccgaccgcaagcggctcaaggaaatcacgtcggacctcgaagtgccg
cagggcatgggcgtgatcctgcgcacggccggcgcctcgcgcaccaaggccgaggtgaag
cgcgatttcgaatatctgatgcgcctgtgggagagtgtgcgctcgctgaccctcaagagc
caggcgccgtgcctggtctatgaggaaggctcgctgatcaagcggaccattcgcgacctc
tacaacaaggatatcgacgaggttttcgtggcgggcgacaacgcctatcgcgaggccaag
gacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagccttacgtcgaagac
cagccgctgttcagcaagtacaatatcgagtcccagctcgaccagatgttctcgccgacg
gtcaccctgccctccggcggctatatcgtcatcaacccgaccgaagcgctggtttccatc
gacgtgaattcgggtcgctccaccaaggagcacaatatcgaggacaccgcgctccagacc
aatctggaagccgccgaggaagtcagccgccagctccgcctgcgcgacctggccggcctc
atcgtcatcgacttcatcgacatgatggaaaaccgctccaatcgggccgtcgagcgcaag
ctcaaggattgcctcaaggacgatcgcgcccgcatccaggttggccgcatcagccatttc
ggcctgatggaaatgagccgccagcgtatccgcttcggcgtggtggaaagttcgacccac
aagtgcccgatctgcgacggcacgggcctggtgcgctccactgaatcgctggcgctgatg
atcatgcgccatatcgaggatcacgtgctgcgccgccagggccagtcgatcaatgtgcgc
gtgccggtggaagtcgcgctctacatcctcaacttcaagcgcgagacgctgacggcgctg
gaaatccgcaaccagttgtcgatcaccatcaccgccgacggcaagctgaccggcaaccag
ttcgccatcgaaaagggcgaagcccgcgtcatggcctatgccgagcagcgcgctaccgaa
catgtccgcgtcgacagcgccatcatcgaagatgccgatgaagacgatgtcgtcgaggaa
accgaggacgaggatgccgaggagcggtcgtccgccgccgataatggcgagggcgaaggc
cggcgccgccgccgccgccgccgtcgtggcggcgccgatcgtggcgatgacaacggccag
cgtccacagcagcagcgcgccgcgcaggcacctgccgtcgaagccgaaggcagcgatgag
gacggcgagggcgacgaggacgaaaatcccgcccgcccgtccggtgaaggtcaggccgat
ggcgagacccgcaagcgtcgccgtcgcggtcgccggggcggccgtcgcaatcgtcgcgat
ggcgaagagggtgccgaacgggccccctcgcctgccggtgacgatgggttgaatgtcgcg
gaaaccgaagcggtagccgagagcctgctggtgcaggacgagatcgtggcggccgaaccg
gctgccgtcgagcccgcgccggtcgaaaagcccaagcgcacgcgccgcaagaaggtcgta
gaaaccgccgaatctgcgccggtcgatgccgcccccgtagaggctacgcctgagccggtt
gcggaagcagcagccgaagcgcctgcggcggaagaaaaacccaagcgcaagccgcgcgcg
ccgcgcaagcccaaggccgaaaccgccgaggcagcgcctgccgcatcggttgcggaagcg
gcccctgtcccagtcgccgacgccgcgcccgcaccagcggcggaagctccggctgcagcg
cccaagccgcgccgcgccaagaaggaactgcccgccgaagggatcgtggtgtcctcaagc
gcgcccaaggcggaagccgaaggcgagccggccgagcccaagaagaaggccggctggtgg
cagcgccgcctcggccttggttag
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