KEGG   Devosia ginsengisoli: FPZ08_05535
Entry
FPZ08_05535       CDS       T06120                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
dea  Devosia ginsengisoli
Pathway
dea02024  Quorum sensing
dea03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dea00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FPZ08_05535 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    FPZ08_05535 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dea03019]
    FPZ08_05535 (hfq)
   03036 Chromosome and associated proteins [BR:dea03036]
    FPZ08_05535 (hfq)
Messenger RNA biogenesis [BR:dea03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     FPZ08_05535 (hfq)
Chromosome and associated proteins [BR:dea03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    FPZ08_05535 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: QDZ10253
UniProt: A0A5B8LQ04
LinkDB
Position
complement(1144173..1144424)
AA seq 83 aa
MANEKQQNLQDSFLNHVRKQKVPVTIFLVNGVKLQGVITWFDNFCLLLRRDAQSQLVYKH
AISTIMPGAPIQLFDPEQNHDSD
NT seq 252 nt   +upstreamnt  +downstreamnt
atggcgaacgaaaaacaacaaaatctgcaggattcctttctcaaccacgttcgcaagcag
aaagtaccggtcacgatctttctcgtgaacggggtgaaactgcagggcgtgatcacctgg
ttcgacaatttctgcctgctgctgcgccgcgacgcgcagtcgcagctggtctacaagcac
gcgatctcgaccatcatgccgggtgcgccgatccagctgttcgatcccgagcagaaccac
gacagcgactga

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