Devosia ginsengisoli: FPZ08_05835
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Entry
FPZ08_05835 CDS
T06120
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dea
Devosia ginsengisoli
Pathway
dea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ08_05835 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dea03019
]
FPZ08_05835 (rnr)
03016 Transfer RNA biogenesis [BR:
dea03016
]
FPZ08_05835 (rnr)
Enzymes [BR:
dea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FPZ08_05835 (rnr)
Messenger RNA biogenesis [BR:
dea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ08_05835 (rnr)
Transfer RNA biogenesis [BR:
dea03016
]
Prokaryotic type
tRNA degradation factors
FPZ08_05835 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QDZ10310
UniProt:
A0A5B8LSS4
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All DBs
Position
1204430..1206718
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AA seq
762 aa
AA seq
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MKSPKTTSKPRSTSGPRRATSPRATELPTREQLLEALAQQSDIKGKRDLAKVFGIRGDMR
RPFKAMLAELEGEGIITRTRKALRRTAALPHVTVLDIPADADPDDLHAFPAQWNDEEGEK
PRVTVLGGRDARVVPAPGDRILARIDAGEGDVPVYTAKAMKILDKPRRGQIGIVRMDDDG
ARLIPVDRKQKEMRIPLGDLLDAKDGDLVEVEVKLSGRLMIPRAKVTSVIGNPMSEGAVS
LIAIHNLEIPYHFPASVIREAEEAKEATLKGREDWRDLPLVTIDPPDAKDHDDAVHAAPD
ADPANPGGHVVTVAIADVAAYIRPGTALDREAYLRGNSVYFPDRVVPMLPERISNELCSL
KQGEPRAALAVRMVMGADGKKRSHSFHRILMRSAAKLSYQQAQAAIDGNADDQTGPLLDP
ILRPLWAAYDAMASARDKRGPLDLDLPERKIVLDDKGMVKDIRIPERLDAHRLIEEMMIA
ANVAAAETLEQKKSALLYRVHDEPSSEKLQALRDFLGSLDISVKKSDSVRASDFNGILSQ
ARKAGNVEQVSEMVLRSQAQAEYAAENYGHFGLNLDRYAHFTSPIRRYADLIVHRALIAA
LGLGDDGLSENEALRLSGIAQHISATERRAMLAERETADRLLAQFLAAQIGARFEGRISG
VTRSGLFVRLLETGADGFIPASTLGEDYYRYTEDQQAMVGDRTGEKFALGDRVTVRLLEA
APVAGALRFELLSEGTRGNPSSGRRGQKRPSRSYGPRGRKKR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcccaaaaaccaccagcaagccccgcagcacctccggcccgcgccgcgcaacc
tccccgcgcgcgaccgagctgccgacccgcgaacagctcctcgaagccctcgcccagcaa
tccgacatcaagggcaagcgcgatctcgccaaggtcttcggcatccgcggcgacatgcgc
cgtcccttcaaggccatgctggccgaactggagggcgaaggcatcatcacgcgcacgcga
aaagccctgcgccgcaccgccgccctgccccatgtcaccgtgctcgacatccccgccgat
gccgaccccgacgatctccacgccttcccggcccagtggaacgacgaggaaggcgaaaaa
ccccgcgtgaccgtgctcggcggccgcgacgcccgcgtcgtccccgcccccggcgaccgc
atcctggcccgcatcgatgccggcgagggcgatgtccccgtctacaccgccaaggcgatg
aaaatcctcgacaagccgcgtcgcggccagatcggcattgtccgcatggacgatgatggc
gctcgcctcatcccggtcgatcgcaagcagaaggaaatgcgcatccccctcggcgacctg
ctcgacgccaaagacggcgatctcgtcgaagtggaagtgaagctctccggccgcctgatg
atcccacgcgccaaggtcacctcggtcatcggcaatcccatgtccgaaggcgccgtcagc
ctcatcgccatccacaatctggaaatcccctaccatttccccgcctcggtcatccgcgag
gccgaggaagccaaagaggccaccctcaagggccgcgaagactggcgcgacctgcccctg
gtcaccatcgacccgcccgacgccaaggaccatgacgacgccgtccacgctgcacccgat
gcggatccggccaatcccggcggccacgtcgtcaccgtggccattgccgatgtcgccgcc
tatatccgccccggcaccgcgctcgatcgcgaggcctatctgcgcggcaattcggtctat
ttccccgaccgcgtcgtgcccatgttgcccgagcgcatttccaacgaactgtgctcgctc
aagcagggcgagccccgcgccgccctcgccgtgcgcatggtcatgggcgcagatggcaaa
aagcgcagccacagtttccatcgcattctcatgcgttcggccgccaagctcagctaccag
caggcccaagccgccatcgacggcaatgccgacgaccagaccggccccttgctggacccc
atcctgcgccccctctgggccgcctatgacgccatggcctcggcgcgcgacaagcgcggc
ccgctcgatctcgacctgcccgagcgcaagatcgtgctcgacgacaaagggatggtgaaa
gacattcgcatccccgaacgcctcgacgcccatcgcctcatcgaggaaatgatgatcgcg
gccaatgtcgccgccgccgaaacgctcgagcagaaaaagtccgctctgctctatcgcgtc
cacgacgagccgagcagcgaaaaacttcaggccctgcgcgacttcctcggttcgctcgac
atctcggtcaagaaatccgacagcgtccgcgccagcgatttcaacggcattctcagccag
gcccgcaaggccggcaatgtcgaacaggtcagcgaaatggtgctgcgcagccaggcgcag
gccgaatatgccgccgagaattacggccatttcggcctcaacctcgaccgctatgcccac
ttcacctcgcccatccgccgctatgccgatctcatcgtccatcgcgcgctgatcgcggcc
ctcggcctgggcgatgatggtctcagcgaaaacgaagccctgcggctatcaggcatcgcc
cagcacatttcggccaccgagcgccgcgccatgctggccgagcgcgaaaccgccgatcgc
ctgctggcgcaattcctcgccgcccagatcggcgcccgcttcgaaggccgcatttccggc
gtcacccgctccggcctttttgtccgcctcctcgaaaccggcgccgatggcttcatcccc
gcctccaccctgggcgaggactactatcgctacaccgaagaccagcaggccatggtcggc
gatcgcaccggcgagaaattcgctttgggcgaccgcgtcaccgtccgcctgctcgaagcc
gctcccgtcgccggcgccctgcgcttcgaactgctgtccgaaggcacgcgcggcaatccg
tcatctggtcggcgcggccagaagcgcccatctaggtcttacggcccccggggccggaaa
aagaggtaa
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