Devosia ginsengisoli: FPZ08_05920
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Entry
FPZ08_05920 CDS
T06120
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dea
Devosia ginsengisoli
Pathway
dea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ08_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dea03019
]
FPZ08_05920
Messenger RNA biogenesis [BR:
dea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ08_05920
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
QDZ10326
UniProt:
A0A5B8LQI5
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Position
complement(1220132..1221805)
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AA seq
557 aa
AA seq
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MAKNQRDELVFVPLGGVGEIGMNMGAYGFGPERSRKWIVVDCGVTFGGPDLPGIELIMAN
PEFLEERADDILGLILTHSHEDHYGAVLDLWPGFEKPVFCTPFTAAMLAAKRAGDGIVEN
VDVTIMRPGKPFSVGPFTIEAINVAHSIPESNALLITTPIGRVLHTGDWKLDPTPVSNAP
TDVARLQKIGEDTSTPLALICDSTNALKDGESPSEADVAANLAAMIAEAPNRVAVTTFAS
NVGRVVSIVRAAEKAGRQVVMSGRSLHRIMGIAKELGMLEGLPPLLDQDAYKTIARNKIV
LICTGSQGEARAAIARIARGDHPVIDLNAGDRMIFSSWAIPGNEREVIDIQNRLIDKGVE
VITQNDGLVHVTGHPRRDELRKLYSWVKPEVLVPVHGEAVHLEAHAKLGRDSGIPTVCEA
RNGDLVRLFPEPMAFPSEVRTGELYLDGLVLCTPEESGVKGRRRLSFGGHVVVSLCVNGG
GQVVSGPDLVIEGLPETEDESLGELVEDTVAGVLKSMPPKRRSDTEVLNSALFKAIRNEV
NAYWGRKPNVSVFVHRV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaaccaaagggatgaactcgtcttcgtgccgcttggcggcgtcggcgagatc
ggcatgaatatgggcgcctacggcttcgggccggaacgctcgcgcaagtggatcgtggtc
gactgcggcgtgactttcggtggcccggacctcccgggcatcgagctgatcatggccaat
cccgaattcctcgaggaacgcgcggacgatattctcggcctgatcctcacccactcccac
gaagaccattatggcgccgtgctcgacctctggccgggctttgaaaagccggtcttctgc
acgccgtttacggctgcaatgctggcggccaagcgggcaggggacggcattgtcgagaat
gtcgatgtcaccatcatgcgcccaggcaagccgttttcggtgggcccattcaccatcgag
gcgatcaatgtcgcgcattcgatccccgaatccaatgccctgctgataacgacgccgatc
ggccgggtattgcataccggcgactggaagctggatccgacgccggtcagcaatgccccg
accgacgtggcgcggctgcagaagatcggcgaggacacatcgaccccgctggcgctgatc
tgcgactccacaaatgcgctcaaggatggcgaaagccccagcgaagccgatgtcgccgcc
aacctggccgccatgatcgccgaggcgcccaatcgcgtggccgtcaccactttcgcctcc
aatgtcggccgcgtggtctccattgtccgggccgccgaaaaggcgggcaggcaggtggtc
atgtcgggtcgctcgctgcaccggatcatgggcatcgccaaggaactcggcatgctcgaa
ggcctgccgccgttgctcgaccaggatgcctacaagaccatcgcgcgtaacaagatcgtg
ctgatctgcaccggcagtcagggcgaggcgcgcgccgccatcgcccgtatcgcgcgcggc
gaccatccggtgatcgaccttaatgccggcgatcgcatgattttctcgtcctgggccatt
ccgggcaacgaacgcgaagtcatcgacatccagaaccggctgatcgacaagggcgtggaa
gtcattacccagaatgacggattggtgcatgtgaccggccatccgcgtcgcgacgagctg
cgtaagctctattcctgggtgaagccggaagtgctggtgccggtgcatggcgaggccgtg
catctggaagcccatgccaagctgggtcgcgattccggcattcccacagtctgcgaagcg
cgcaatggcgacctggtgcggctgttccccgagccgatggctttcccgtcggaagtgcgc
acgggcgaactctatctcgatggcctggtgctgtgcacgcccgaggaatccggcgtcaaa
ggccgccgccggctgtcctttggcgggcatgtcgtggtcagcctctgcgtgaatggtggc
ggccaggtcgtgtcgggccccgatctcgtgatcgaggggctgccggagaccgaggacgag
tcgctgggtgaactggtggaggacactgttgccggcgtgctcaaatccatgccgcccaag
cgccgcagcgataccgaagtgctgaactcggccctgttcaaggcgatccgcaacgaggtc
aacgcctattggggacgcaagcccaacgtttcggtgttcgtgcatcgggtctga
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