Devosia ginsengisoli: FPZ08_10485
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Entry
FPZ08_10485 CDS
T06120
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dea
Devosia ginsengisoli
Pathway
dea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ08_10485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dea03019
]
FPZ08_10485
Enzymes [BR:
dea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPZ08_10485
Messenger RNA biogenesis [BR:
dea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPZ08_10485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QDZ11145
UniProt:
A0A5B8LTL6
LinkDB
All DBs
Position
complement(2143318..2144904)
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AA seq
528 aa
AA seq
DB search
MRSATSALHCPARLQAPYRRRKTCLLNDFISLGLPTILTDSLTAGGFTEPTKIQTQAIPK
LLEGKDMMGIAQTGSGKTAAFGLPILAGLLTLNGRPRPLTTRALILAPTRELAVQIDEAI
RKFAGSKMKLDTVLLLGGVSRYHQVKRLERGVDITVATPGRLKDLMDDGKIRLNETRWFV
LDEADRMLDMGFIAPVRAVAKAIGIKRHTMMFSATMAPEVADLAKSLLQDPVRVDASVAG
STVVKIDQRVILSGAKAKRGVLNELLASQEENMERVIIFSRTKHGADRVAKNLEIDGHKA
AAIHGNKSQNARQAALKGFASGDVRILVATDIAARGIDVPGITHVVNYELPDDPENYVHR
IGRTGRNGASGTAITLCDGTERGKLRDVERLIRRTLPYTGDLHTGNDTGVVEAPRSAYKK
PNGGRPGPRSAKNPRQPQADRRSPAERRPFADFAKELGGKSQPQPHHQPSEAPRARNDGQ
VNRVRRDSETGKPVAKRVDGKPAAAANNKQRWGKARKDASKTRRSANA
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcggcgacaagcgcgctgcattgtcctgcgcgcctgcaagcgccgtatcggcgc
agaaagacgtgtcttttgaacgacttcatttctctcggcctgccgaccattctcaccgac
agcctgactgccggcggcttcaccgagcctaccaaaatccagacccaggccattcccaag
ctcctcgagggcaaggacatgatgggcattgcccagaccggctcgggcaagaccgctgct
ttcggcctgccgatcctggcggggctgctgaccctcaatggtcgcccgcggccgctgacc
acccgcgcgctcatcctggcgccgacgcgcgaactggccgtgcagatcgacgaagccatc
cgcaagttcgccggctccaagatgaagctcgataccgtgctgctgctgggcggcgtgtcg
cgctaccatcaggtcaagcgcctggagcgcggcgtcgatattaccgtcgccacccctggt
cgcctcaaggacctgatggatgacggcaagatccggctcaacgagacgcgctggttcgtg
ctggatgaagccgaccgcatgctcgacatgggcttcatcgccccggtgcgcgcggtggcc
aaggccatcggcatcaaacgccacaccatgatgttctcggccacgatggcgcctgaagtg
gcggatctggcaaaaagcctgctgcaggatccggtgcgcgtcgatgcgtcggtggccggt
tccaccgtggtcaagatcgaccagcgcgtgatcctctccggtgccaaggccaagcgtggc
gtgctcaacgagctgctggccagccaagaagagaatatggaacgcgtgatcatcttctcg
cgcaccaagcatggcgccgatcgcgtcgccaagaatctcgagatcgacgggcacaaggct
gcggccattcatggcaacaagagccagaatgcccgccaagcggcgctcaagggctttgcc
tcaggcgatgtgcgcattctggttgccaccgatatcgcggcgcgcggcatcgacgtgccc
ggtatcacccatgtggtgaattacgagctgcccgacgatccggagaattatgtgcaccgc
atcggccgcactggccgaaacggcgcttcgggcacggcgatcacgctgtgcgacggcacc
gagcgcggcaagctgcgcgacgtggaacggctgatccgccggacgctgccctataccggc
gatctacataccggcaacgacaccggtgtcgtcgaagcgccgcgctcggcctacaagaag
cccaatggtggccggccgggtccgcgttcggccaagaatccgcgccagccgcaggctgat
cgtcgttcgccggccgagcgtcgtccgtttgccgatttcgccaaggaactgggcggcaag
agccagccgcagccgcatcaccagccgtccgaggcgccgcgggcgcgcaatgacgggcag
gtgaaccgcgtgcgccgcgacagcgagaccggcaagccggtggccaagcgcgtggatggc
aagccggccgccgcggctaataacaagcagcgctggggcaaggcccgcaaggatgcctcc
aaaacccggcgcagcgcgaacgcgtag
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