KEGG   Devosia ginsengisoli: FPZ08_16320
Entry
FPZ08_16320       CDS       T06120                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dea  Devosia ginsengisoli
Pathway
dea03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dea00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FPZ08_16320 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dea03021]
    FPZ08_16320 (rho)
   03019 Messenger RNA biogenesis [BR:dea03019]
    FPZ08_16320 (rho)
Transcription machinery [BR:dea03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     FPZ08_16320 (rho)
Messenger RNA biogenesis [BR:dea03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     FPZ08_16320 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 ATPase_2 AAA Fungal_virus_P2_C DnaB_C AAA_14 AAA_16 Spore_III_AA
Other DBs
NCBI-ProteinID: QDZ12171
UniProt: A0A5B8LWG1
LinkDB
Position
complement(3336875..3338140)
AA seq 421 aa
MQNMKLSELKAKSPAELLVFAEEHEVENASTMRKQELMFAILKELAAQEVDITGEGVVEV
LPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKDGERYFALLKVN
SINFEDPEAVRHKVNFDNLTPLYPEERLRMELPDPTIKDRSARLLDLVAPLGKGQRALIV
APPRTGKTVLLQNIAQSIATNHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAS
RHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEDGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRIFPA
LDITKSGTRKEELLVEADILKKMYVLRRILNPMGTIDAMEFLVDKVRQTKTNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcagaatatgaagctcagcgagctcaaggccaaatccccggccgaactcctggtgttc
gctgaagaacacgaggtcgagaatgcctcgaccatgcgcaaacaggaattgatgtttgcc
atcctcaaggaactggccgcccaggaagtggacattaccggcgaaggtgtcgtcgaagtc
ctgcccgatggtttcggcttcctgcggtccccggacgccaattatctcccgggccccgac
gacatctatgtcagcccctcgcaaatccgccgctttggtctccgtaccggcgacacggtt
gaaggccagatccggtctcccaaggatggcgagcgctatttcgcgttgctcaaggtcaat
tccatcaatttcgaagatcccgaggcggtccgccacaaggtcaacttcgacaacctcacc
ccgctctatcccgaggaacggctccgcatggagctgcccgatccgaccatcaaggatcgc
tcggcccggctgctcgatctcgttgccccgctcggcaagggtcagcgcgccttgattgtt
gcgccgccgcgtactggtaaaaccgtattgttgcagaatattgcacagtcgatcgccacc
aatcatcccgaatgctatctgatcgtgctgctgatcgacgagcgccccgaagaagtgacc
gacatgcagcgctcggtgcgtggcgaagtcatctcctcgaccttcgacgagccggcatcg
cgccacgtccaggtcgccgaaatggtgatcgaaaaggccaagcgcctggtcgaacacaag
cgcgacgtggtcatcctgctcgattccatcacccgcctcggccgtgcctacaacaccgtc
gtgccgagctccggcaaggttctcacgggcggcgtggacgccaatgctctgcagcgcccc
aaacgcttcttcggcgccgcccgcaatatcgaggatggcggttcgctgaccatcatttcg
accgcgctgatcgataccggctcgcgcatggacgaagtgatcttcgaggaattcaagggt
accggtaactcggaaatcatccttgaccgcaaggtcgccgacaagcgcatcttcccggcg
ctcgacatcaccaagtcgggcacccgcaaggaagagctgctggtcgaagccgacattctc
aagaagatgtatgtgctacgccgtatcctcaacccgatgggaacgatcgacgccatggaa
ttcctggtcgacaaggtccgccagaccaagacaaattccgatttcttcgactcgatgaat
acctga

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