Dehalococcoides mccartyi BAV1: DehaBAV1_0169
Help
Entry
DehaBAV1_0169 CDS
T00518
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
deb
Dehalococcoides mccartyi BAV1
Pathway
deb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DehaBAV1_0169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deb03019
]
DehaBAV1_0169
Enzymes [BR:
deb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DehaBAV1_0169
Messenger RNA biogenesis [BR:
deb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DehaBAV1_0169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABQ16760
LinkDB
All DBs
Position
complement(169433..171118)
Genome browser
AA seq
561 aa
AA seq
DB search
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTDTPSEMPV
SPARPFNPGFRPSRPANSAPRFHREGNFAPRMQSHSSFEGTSAPAARPAARYNDRPAFRK
ENSFQTTEASRPSFRKETGFTPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNK
VGKPPFFRRSKPAVSEKNETY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgatccggctgttatggctggagtcagagcctgcggc
tataaagagcccacccccattcaggcacaggctattccccccattatggctggacatgat
gttatcggtctggctcagaccggcaccggtaaaaccgctgcttatgccttgcccattatt
caaaaaatgctttctacccccaggggacgggtgcgtactctggtaattgcacccaccagg
gaactggcttgccagatttctgatagttttcgttcacttggccagcgcgcccgtatacgg
gagtgctccatttacggcggagtgaatatggaccagcaaattcgccgcttacggagcggt
gtagacgtagtagtggcttgccccggcaggcttctggatcacatatggcggggaactatt
gatgtctgcggggtggaaaccctgataatagacgaagctgaccgcatgtttgacatgggt
ttccagccggatatccagagcattttgaagtgtctggttcagccgcatcaaacccttttg
ttttcggcaactatgccgccggaagtccgcaagcttactctggaaactcagactaatccg
gtaactgtacaggttggtacccagtctccggtaagcagtgtcagccatagtgtttatccg
gtgaaaagtcaccagaaaaccccgttactgcttgaaatattgaaaacggtagaaaccaag
tcagttctgatatttgcccgcaccaaatatggagcggaaaatctggctgatgaaatatcc
aaggccgggtttactacagcctcccttcagggcaatctttcccaaaaccgccgtcatgct
gttatggaagggttccgccgcgggaatttcaaaattctggtagctaccgatattgccgcc
agaggtttggatattgaccatatatcccatgtaataaattacgatatgccggattccccg
gaagactatactcaccgtattggccggacaggacgctttgaccgcacaggacaggctttc
agtctggtaaccggacgtgacggggatatggtaagagatatccagaggcttttaagcagc
cccattcagcgtctgcgggttgacgggtttgattatgctacgacccgcaatgatggacag
aaccagtcacagcgcagggattttgcaccccgccggggttattcccatggcggttataat
cgccctgaaatggctgtaaatgaaacttcacaaacggatactccgtctgaaatgccggta
agccccgcaaggccttttaatcccggtttccggcccagccgtccggcaaattctgctccc
cgtttccatagggaggggaactttgccccccgtatgcagagccactcttcttttgagggt
acctctgccccagcggccagacctgcagcccggtataatgaccgtcctgcttttagaaaa
gaaaacagttttcaaactaccgaggcgtcacggccttcttttaggaaggaaacagggttt
actccccgtgagcatacgcaggctgattttgaaaatagcgaacagccttcaggcaggcgt
cctgcccggtttaacgggaaagcttcttttgcagaccgcccggcacgttcggggaataaa
gtggggaaaccgcccttctttaggcgttcaaaaccagctgtttcagagaaaaacgaaact
tactag
DBGET
integrated database retrieval system
