Dehalococcoides mccartyi BAV1: DehaBAV1_0479
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Entry
DehaBAV1_0479 CDS
T00518
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
deb
Dehalococcoides mccartyi BAV1
Pathway
deb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DehaBAV1_0479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deb03021
]
DehaBAV1_0479
03400 DNA repair and recombination proteins [BR:
deb03400
]
DehaBAV1_0479
Enzymes [BR:
deb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DehaBAV1_0479
Transcription machinery [BR:
deb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DehaBAV1_0479
DNA repair and recombination proteins [BR:
deb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DehaBAV1_0479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF2325
Motif
Other DBs
NCBI-ProteinID:
ABQ17064
LinkDB
All DBs
Position
466946..467938
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AA seq
330 aa
AA seq
DB search
MSDLAIPTISCTESDGKYGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGIQ
HEFCALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLRASGSKVVTAADIEPSNDFEVVN
PELYLLTLDSDDAVLNVELEVELGRGYRPPESAENTPIGTIPVDAIFTPIRKVNFTTEPM
HVGRETSLERLVLEVWTDGTVEPATAVSRSADILVKQFASLVSHSKVVAEIEASEPVKYT
IPEEKYNMPIEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRL
KTIGLSLNPEDELFEEAENNKKKNKGIDED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgatctagctatacccacaattagttgcaccgagagcgacggcaagtacggacgc
tttgtggtagagcctttggaaaaaggttttgggactactatgggtaattcacttcgacgt
atacttcttagctatctggacggggttgctattacccgtgtccggatagatggtatccag
catgagttttgtgctctgcccaaggccaaagaagatacacttgattttttattgaacctt
aaaaatataagggttgagagcctttcaggacttgagggtattttgtacctgagagcttcc
ggctccaaggtggttacggcagcagatattgaaccctcaaatgattttgaggtagtaaat
cctgagctatatctgcttacccttgattcagatgatgctgttttgaatgtggaacttgaa
gtagagcttggccggggctatcgtcctccggaaagcgccgagaatacgcctataggcact
attccggtagatgccatcttcacccccattcgcaaggtgaactttaccaccgagcctatg
catgtaggccgtgaaaccagtcttgaacgtttggtgcttgaggtatggactgacggtaca
gtagaacctgccaccgcagtcagccgctcagctgatattctggtgaaacagtttgcgtct
ctggttagccacagcaaggtagtggctgaaatagaagccagcgagccggttaaatatact
ataccggaagaaaaatataacatgcctattgaacagttggatctgtctgtcagggcagta
aattgcctgcgtcatgccggcataactaccgtaggcgaggtcataaacaggggaaccaag
gaactgcttactttgcgcaactttggccttaagtctctgacggagcttgaggacagacta
aagaccattggtttgtccctgaaccctgaagatgagttgtttgaagaagctgaaaacaat
aagaagaaaaacaagggcatagacgaagactaa
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