Dehalobacter sp. CF: DCF50_p2108
Help
Entry
DCF50_p2108 CDS
T02279
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dec
Dehalobacter sp. CF
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dec03032
]
DCF50_p2108
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2108
Enzymes [BR:
dec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DCF50_p2108
DNA replication proteins [BR:
dec03032
]
Prokaryotic type
DNA Topoisomerases
DCF50_p2108
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DCF50_p2108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_GRF
HVO_2753_ZBP
Toprim_4
Lipoprotein_9
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
AFV06111
UniProt:
K4L668
LinkDB
All DBs
Position
complement(2164283..2166376)
Genome browser
AA seq
697 aa
AA seq
DB search
MSKTLVIVESPAKAKSISKFLSKNYLVKASMGHLRDLPKSQIGVDIDHNFEPKYIAIRGR
GDLVKELKAAAKTADRVLLASDPDREGEAIAWHLTHLLGLNPEELSRVEFHEITKPTIQN
AVKNPRKLDIHLVDAQQARRVLDRLVGYKLSPLLWRKVKKGLSAGRVQSVAVRMICDREE
EIRNFEPEEYWTLDADFLCRGGSFAAKLLHKQGKKMTISSREQMDEVLQELRAAAFTVGE
VKTKEKRKQPAPPFTTSSLQQEAYRKLNFTPKKTMMLAQQLYEGLDLGKAGTVGLISYMR
TDSVRIADTAQEEAKGFIIETYGETYYPEEPRKFASKGRTQEAHEAIRPTSALRTPESVK
GFLGREQFKLYRLIWDRFVASQMSAAVYDTITVDVLAGDYLLRANASAVKFPGYLTVYEE
STDEPEKLDNEENCLKGDLAIGQKLQLRQLQEKQHFTEPPARYTEATLVRKMEEEGIGRP
STYAPTIETIQTRGYVAKEDKKLVPTELGEIVINLLKEHFPDIVDQEFTANMEEKLDDIE
DGKSDWKKIVGEFYGPFAVTLDKAEQKIGKIKVEDEVSDEVCELCGRNMVIKMGRFGKFL
ACPGFPDCRNARPLLEEIGVNCPKCGEKLVVRRSKKGRKFYGCSKYPDCDFISWEKPAPH
PCPECGGVMTEKSTRKNKKYVCTNHDCRFTEEIKETE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactttggttatcgttgaatccccggctaaggcaaaatctatcagcaaattt
ttgtccaaaaattatctggtcaaagcttccatgggacatctgcgggatttgccaaagagc
cagatcggggttgatatcgatcataattttgagccgaaatacattgcaatcagaggacgc
ggcgatttggtcaaagagcttaaagctgcagctaaaactgccgaccgtgtcttgctggcg
tccgaccccgacagggaaggtgaagcgattgcctggcacttgacgcacttgctcggtctg
aatcccgaagagctgagcagggtcgaatttcatgaaataacaaaaccaacgattcaaaat
gccgtaaagaatccccgtaaactggatatacatctcgtagatgcccagcaggcgcgcagg
gtcttggacagactggtgggctacaaattaagcccgcttctgtggcggaaagttaaaaaa
ggtttaagtgccggacgtgttcaatctgttgcggtcagaatgatctgtgacagagaagaa
gaaatccgcaactttgaaccggaagagtactggactctggatgcggattttttgtgccgg
ggcggcagttttgccgccaaactgcttcataagcagggcaaaaagatgacaatttcgagc
cgcgagcagatggatgaagtcttgcaggaactccgggcggccgcattcacggtcggagag
gtgaaaacgaaggaaaaacgaaaacagccggcacctccttttacgaccagcagtcttcag
caggaagcctaccgcaaattaaactttacacctaaaaagacgatgatgctggcccagcag
ctctatgaaggacttgatctcgggaaggccggtacggtcggattaatttcgtatatgcgt
acggactctgtccggatcgctgacactgcacaggaagaggccaaaggttttatcatcgag
acttacggcgaaacctattatcccgaggagccgaggaaatttgccagcaaaggccggacc
caggaagcgcacgaggcaatcagaccgacatccgctctcaggacgcctgaatccgtcaaa
gggtttctcggacgagagcagttcaagctttaccggctgatctgggaccgttttgtcgcc
agtcagatgagtgcggcagtttatgatacgattaccgtagacgttctggccggtgattac
cttttaagagccaatgcttcagccgtgaagtttccgggatatctcactgtctatgaagaa
agcaccgatgaaccggaaaaactggataatgaggaaaactgcctgaaaggagatctcgcc
atcgggcagaaactgcagttaaggcagcttcaggagaagcagcatttcaccgaacccccg
gcgcgttatactgaggcaaccttggttcggaaaatggaggaagaggggatcgggcgtccg
agtacgtatgcgccgacgattgaaacgattcaaacgaggggctatgtagcaaaggaagac
aagaaacttgttccaaccgaacttggtgaaattgtgatcaacttgctgaaagagcatttt
ccggatattgttgaccaggagtttacagccaacatggaggaaaagcttgacgatatcgaa
gacggaaaatcggattggaagaaaattgtcggagaattttacggcccgtttgccgttaca
cttgataaagctgagcagaagatcggcaaaatcaaagttgaggatgaagtttcagatgaa
gtctgtgaactttgcggcaggaatatggtcatcaagatgggacggttcggaaagtttttg
gcttgcccgggttttcctgactgccggaatgcgcggcctttactcgaggaaatcggcgta
aactgcccgaaatgcggagaaaaacttgtcgtcaggagatcgaaaaaaggacgtaagttt
tacggctgcagcaaatacccggactgtgattttatttcctgggagaaaccggcacctcac
ccttgtccggagtgcggcggggtaatgaccgagaaaagtaccagaaaaaacaaaaaatat
gtctgcaccaatcatgactgcaggtttaccgaagaaatcaaggaaacagaataa
DBGET
integrated database retrieval system
