Dehalobacter sp. CF: DCF50_p2228
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Entry
DCF50_p2228 CDS
T02279
Name
(GenBank) ATP-dependent nuclease, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
dec
Dehalobacter sp. CF
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2228
Enzymes [BR:
dec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCF50_p2228
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DCF50_p2228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
AAA_12
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFV06231
UniProt:
K4L6L0
LinkDB
All DBs
Position
complement(2286344..2290426)
Genome browser
AA seq
1360 aa
AA seq
DB search
MTDQTKWTNEQWEAITAKDCNLLVAAAAGAGKTAVLVERIIQRITDSHDPVDIDRLLVVT
FTNAAAAEMRERIAEALAAVQESNPGSSNMQKQLTLLSKASITTIHSFCLEVIRSNFQAI
NIDPSFRIADETETMLMKMEVLNDLFDEMYEENAENQDFFELLECYGGNRDDQALQDMVL
NLHTFIQSSPWPEKWLAEMTGRFGIPEGTDFSQTCWGKVLLKSIGLEIEGLIQNMQAAVA
LLQPGAGLDKYRPVFEEEYCFLQHIRELCLEERNARWDDLGQTVRNYPFQRLPSAGKDAD
KAVQEQVKEIRDQVKKKIGKLKERALAADSAEIRADLQTLRPLMQCLSRLVVEFERRYAL
KKNGKSLVDFNDLEHFCLEILTVQDETGAYVPSEAAKRYQERFAEILVDEYQDSNLVQEI
LLQMISRTGSARPNVFMVGDVKQSIYRFRQAKPELFLEKYHSYSPEQGASHRKICLYKNF
RSRREVVDAVNYIFRQIMSVQVGELDYNDNEALNPGAVFAENDQEQLTVGGSVEFHLIQT
GDPERLDQENGFSDSSGQEEQELTEFADASNGLSDETEQIDPGMLDAIQCEARFAVRRIE
ELFQPDEQGRRTAVYDKESKAYRELRCSDIVILLRTTRNWSEVFTEELTAAGIPAFADTG
TGFFKSSEVQVILSLLQIIDNPLQDIPLLAVLRSPLAAFSSDELAGLRLNRRHVPIYEAI
KQLVEETAEEDTPEPESRKPDNELESSKPEIKFQNQLVDGKSEIKKMKNATPEKETLKKK
AAMFLNNLHRWRDTAQYLSADRLLWQLYTETGYYGIVGAMPGGVQRQANLRILFERARQY
EETSFKGLFNFINFIDKLKSNQGDFGSAKILGENDNVVRIMSIHKSKGLEFPVVILAGCG
KKFNFQDLNRSILFHQELGLGPDVADPRLRIAYPSVPKYAIREQIRMETLSEEMRILYVA
LTRAREKLIISGAVSNARKALNKWSKAAAGDQEKLPAYEVFKGEKYLDWIGPALIKHRGC
STATRTGWLGYPTDVTEGAPGNGLLDDPSEWQIRMWTKNELLGRSAVQEQEEETFIRWLA
GLHQETEDHGDTEVNDDKNDNNDSRDNRDNNDSDSDRLHRKDVKKEIARRLGWEYTFTAS
TRIPPKVSVTELKRRLEAELSEEMGLGLANGSASLPQLIKKPLFLEEKKGLNAAEAGTIL
HFVMQHLDIQHDDIPSQIQEMVKKELLTEQQAESVDPEKIRLFLESPLGCRMKASGSVNR
EVRFNIEIPCREVFSDMAAGVCGQEVVLLQGIIDCYFEEEDGIVLVDYKTDQIPEGGSRI
ILERYRQQILYYARALEMLTGKKVKEKYFYLFSCGEVLQS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcagacgaaatggacgaatgaacaatgggaagcaattacggccaaggactgc
aacctgctggttgcagcggccgccggggccggcaagacggccgtgcttgtggaacggatc
atccaaagaattacagacagccatgatcctgtggacattgaccggctgctcgtggtgacg
tttaccaatgcagctgcggcagagatgagggaaaggattgccgaagcgctcgctgcagta
caggaaagcaatccggggtcttccaatatgcaaaaacagctgacgctgttgagcaaagcc
agtattacaaccattcactcgttttgtcttgaggtcatccgcagtaacttccaggccatt
aatattgatccgtctttccggattgccgatgagacggaaacgatgctgatgaaaatggaa
gtactcaatgacctgttcgatgaaatgtatgaagagaatgccgagaatcaggattttttt
gaacttttagagtgttatggcggcaacagggacgatcaggccttacaggacatggtgctg
aatttgcatacgtttatacaaagcagtccctggccggaaaaatggcttgcagagatgaca
gggcgtttcggcatacccgaaggtacggatttcagtcagacctgctggggaaaagtcctg
cttaaaagtatcgggctcgaaattgagggactgatacagaatatgcaggccgcagttgcg
cttctgcagcctggtgccggactggataaataccgtcctgtcttcgaggaagaatactgc
tttttacagcatatccgggagctttgtctggaagagcgtaatgccagatgggatgacctt
ggccaaacagtccggaactacccgtttcaaagactgccgtcagccggcaaagatgcggat
aaagctgttcaggagcaggtcaaagaaatccgggatcaggtcaaaaagaagattggtaaa
ctgaaagaacgggctctggcagctgattcggcagaaatcagagcagatttgcagaccctt
cggccgctgatgcagtgtctgagcagactggttgttgaatttgaacgcagatatgcgttg
aaaaagaatggcaagtctctggtggattttaatgacctggagcatttttgcctcgaaatt
ctgacggtgcaggatgaaacgggagcgtatgtgccgtctgaagcagccaaacgctatcag
gaacgtttcgcggaaattctggtcgatgagtaccaggacagcaatctggtccaggagatt
ttgcttcagatgatttcccgcacaggatcagccagaccgaatgtctttatggtcggagat
gtcaaacagagtatttacagattcagacaggctaaaccggaactgtttctggagaagtat
cacagttactctccggaacaaggcgccagccatcggaaaatttgcctgtataagaatttc
cgcagccgccgggaagtggttgatgctgttaactacattttcaggcagatcatgtcggtg
caggtcggggaactggactacaatgacaacgaggctttgaatccgggagccgtctttgcc
gaaaatgaccaggaacagctgactgttggcggatccgtagaatttcatcttattcaaaca
ggtgatccggagcggttggatcaggaaaacggattttctgacagttcaggtcaggaagaa
caggaattgacggagtttgcggacgcctcaaatggactctctgatgaaacggaacagatt
gacccgggtatgctggatgcgatccagtgtgaagcccgttttgcggtacgaaggatagag
gagctattccagccggacgaacagggcagacggacggcagtttatgataaggaaagcaaa
gcataccgagagctgcgttgcagcgacattgtcattcttctccggaccacccggaactgg
tccgaggtattcacagaggaactgacggcggctggcatccctgcctttgctgataccggc
acaggatttttcaagtcttccgaggtacaggtaatcctgtcactgctccagatcattgat
aatccgttgcaggatattccgttattggccgttctgagatcgccgctggccgctttctca
tctgatgaactcgccgggctgcggcttaacagacggcatgtgccaatctatgaggcgatc
aaacagttggtggaagagacggcagaagaggatacccctgaaccagagagcagaaagcct
gataacgaattagagagcagtaagccggaaatcaaatttcagaaccaactcgtggacgga
aaatctgagataaaaaagatgaaaaacgcaacacctgaaaaagaaacgctgaaaaagaaa
gcagcaatgttcctgaacaaccttcacagatggcgggacaccgctcaatatctgtctgcc
gacaggctgctctggcagctttataccgagacaggctattatgggattgtcggagcgatg
cctgggggcgtgcagcgtcaggccaatctccggattctatttgaacgggccagacaatat
gaggaaacgagctttaaagggctgttcaattttattaatttcattgacaagctaaaaagc
aaccagggtgattttggcagtgctaaaatccttggtgaaaatgataatgtcgtccggatt
atgagtattcataaaagcaaagggctggaattcccggtcgttattttggccggatgcggc
aagaaatttaactttcaggatttaaacaggagtattttatttcaccaggagcttggactc
ggtcctgacgttgcggatccgaggctcaggatagcgtatccgtctgttcctaaatatgca
attcgggaacaaatcaggatggagaccctgtcggaagaaatgcggattctctatgtggcc
ttgaccagagccagggaaaagctgattatctccggagcagtttccaatgcccggaaggcg
ttgaataaatggtctaaagctgctgcaggtgatcaggaaaagctgcctgcatacgaagta
ttcaaaggagaaaaatatctggactggatcgggccggcactcataaagcaccggggctgc
agcactgccactcggaccggctggctcgggtatcctaccgatgtaacagagggagcaccg
ggaaacggtctgcttgacgatccgtccgaatggcagatccgcatgtggacaaaaaatgag
cttcttggcagatcagccgttcaggaacaggaagaagaaacattcatccgatggctggcc
ggtttacatcaggagaccgaagatcacggtgataccgaagttaatgatgataaaaacgat
aataacgatagtagagataatcgtgataataacgacagcgacagtgatcggctccaccgc
aaagatgtaaagaaagagattgcgcgaaggcttggctgggagtataccttcactgccagt
acccgaatcccgcccaaagtctctgtcaccgaactgaagagacggctggaagcggagctt
tcggaagagatggggctggggcttgcaaacggatcggcttccctgccgcagctgatcaaa
aagccgttatttctcgaagaaaagaaagggctgaatgcggcagaagccggaacaattttg
cattttgtcatgcagcacctggatattcaacacgatgatatcccaagtcagattcaggaa
atggttaaaaaagaactgcttacagagcagcaggccgaaagcgtcgatccggaaaagata
cgacttttcctcgaatctccgctcggatgcagaatgaaggcttcaggcagtgtgaaccgt
gaagtccgcttcaatatagaaataccatgccgggaagtattctccgacatggcggcaggt
gtctgcgggcaggaggtcgtcctgttacagggcattattgactgttattttgaggaagag
gatgggattgtcctggttgactataagacggaccagattccggaaggcggatcccgcatt
attctagaaaggtaccgccagcagattctctattacgccagggcgctggaaatgctgaca
gggaaaaaagtcaaagaaaagtacttttatctttttagctgcggcgaggtcttgcagtcc
tga
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