Dehalobacter sp. CF: DCF50_p2229
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Entry
DCF50_p2229 CDS
T02279
Name
(GenBank) ATP-dependent nuclease, subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
dec
Dehalobacter sp. CF
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2229
Enzymes [BR:
dec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCF50_p2229
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DCF50_p2229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AFV06232
UniProt:
K4L4P9
LinkDB
All DBs
Position
complement(2290419..2293922)
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AA seq
1167 aa
AA seq
DB search
MSLRFIYGRSGSGKSSYCLNEIKERINTGADHPLVLLVPEQYTLQAERDLINVLKTGGIL
KTEVLSFRRLAFRVFNEAGGITYPHIHPAGKSMLIYRILTQIKDELKFYARSAGRKGFVS
SLSGLITELKRYNVTPEDLQNVIAGMADQPLKDKLTELNAVYFGFEELIRQRYRDSDDDL
ALAAVKLESTNIFDGAEIWVDGFAGFTPQEYKVITRLLLKVNRVNICLCTDCLDEEGLME
TDVFSEVKGVYRKFKKICQEAGLKIEPPVHLAEVPLPRFRYSRELSHLERYYDAYPYRVY
PEATRDISLHASVNVYTEIEAAAADIVRLCRDGGLRYRDIAVVTGNLDGYRSFLETVFAE
YEIPYFLDSKTEITDHPLVRMILAMLDIFNDHWSYEAVFAYLKTGLTGLDRERMDRIENY
VLACGVRGSRWTKNEDWSMRPGLLPEENYRSQDVEKAETELKEINQTRREIVAPLLQFRA
KTKNRKKASEICEALYDFLCGIGVPARLETAMEEFRRQGMLSLANEYGQVWNILMNVLDQ
TVEIMDEEPLSLENFADTLKIGFAEYRIGLIPASLDQVLIGSIERFRSHEIKALFILGVN
DGVFPSSAQTEGILADADRAVLNTLGVELANDTRTQAFQAQYLIYRSLTTASSYLHLSWP
IADQEGRSLRPSLVIYRLRKLFPEISENSTLIPVLSRFAAGKENAETKNTWIESDELELL
TGKSPSFKQMVAAFRCKAEGLEINGWWQDVYRWYNGLEEWKPRCEALQTAFSARNIAEPV
SSAKITALYGASAHTSASRLEKYASCQFAFYLQYGLEAKERKIYQFSPPDVGTFMHAVLE
RFSLEAAQQQISWREMERPWCREKVSAIVDEILQNMQGSGLTASQRYTSLALRLKRVITR
AVWMIAEHLRRSGFEPLGYELGFGEREKFPPIVIELDSGRKVSLSGRIDRVDALEAEEGT
YLRIVDYKSGSKDFKLADVYYGLQIQLFTYLDALWQNSGLETEKPVLPGGILYFRIDDPI
VRADGRLTEEEIELDIMKQLKMKGLLLADVKLIKEMDRTIDGTSLIIPARINKGDLLGKS
SAATLEQFEILREYVRNLLKNLCEEMMSGSVSITPYKKKRITSCTYCCYAAVCQFDPARK
ENSFRLLTDRGDEEIWNDIMKAEQNHD
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttaggtttatctatggacggtccggcagcggcaagtccagctattgcttgaac
gaaataaaggaacgtatcaacaccggagcggatcatccgctggtgctgcttgtgccggaa
cagtatacgctgcaggcggagagagacttgattaatgtgctgaagaccggcggtatttta
aagacggaagtattaagtttccgccgcctagcattcagggtatttaatgaggcgggtgga
atcacgtatccgcatattcatccagccggcaaaagcatgctgatttatcgaattttaacg
cagatcaaagacgaactgaagttctatgcgagatcagccggccgcaaggggtttgtcagc
tcgctttctgggttgatcacggaactgaaaagatataatgtcacgccggaagatctgcag
aacgtcattgccggtatggcggatcagccgctcaaggacaaactgaccgaactgaatgcc
gtctatttcgggttcgaggaattgatccggcaaagataccgggacagtgacgatgatctt
gccctggcggcagtcaagctggaatccacgaacatttttgacggcgcagaaatctgggtt
gatggttttgccggatttacaccgcaggaatacaaagtcatcacaaggctgctgcttaag
gtgaacagggtgaacatttgtctgtgtacggactgtcttgatgaagaaggtctgatggaa
accgatgtattctctgaagttaaaggcgtgtaccgtaagtttaagaaaatctgccaggag
gcgggtttgaagattgagccgccggttcatttggcggaagttcctctgcccaggttccgc
tacagtagagagttgtcccacctcgaacgatattatgatgcctatccgtaccgggtatat
ccagaagcaaccagggatatctccctgcatgcttcggtgaatgtctatacggagattgaa
gctgcagcggcagacatagtcaggctctgccgggatggagggctcagatacagagatatc
gccgtagtcaccggaaatctggacggctaccggagtttcctggaaactgtttttgctgag
tatgaaattccgtattttttggacagtaagaccgagatcacggatcatccgctggtcaga
atgattctggcgatgctcgacatatttaacgaccactggtcttatgaagcggtatttgcg
tatctgaaaaccggattgaccggtctggacagggagcgtatggaccgcattgaaaattat
gtactggcctgcggagtccgcggaagccgctggacgaaaaatgaagactggtcaatgcgt
ccaggcttactgccggaagaaaattaccggtctcaagatgtggaaaaggccgaaacggag
ctgaaggagatcaatcagaccagacgcgagattgtagccccgcttcttcaattccgcgcc
aaaaccaagaacagaaaaaaggcttcggaaatctgcgaggccttatatgattttctttgc
gggataggcgtcccggccaggctggaaacagccatggaagaattcagaaggcagggaatg
ctgagtctggctaatgaatacggccaggtttggaatatcctgatgaacgtactggatcag
actgtggagatcatggatgaggagcctttgagtcttgaaaactttgcggataccctgaaa
attggctttgccgaataccggatcgggttgataccggcttccctggatcaggttttgatc
ggcagcatcgagcggtttcgaagccatgagatcaaagcactttttattttaggggtcaat
gacggggtgttcccttcctctgctcagacggaaggcatcctggctgatgcggaccgtgct
gtgctgaatacattgggtgtcgaactggctaatgacacccgaacgcaggcttttcaggcc
cagtatctgatttaccgatctttgacgaccgcatcttcttatcttcacctgagctggccg
atcgccgaccaggaaggccgaagcttgcggccttcgttggtgatttaccggctgaggaag
ctgttcccggaaatttcggaaaacagtacgctgattccagtgctatccaggtttgctgct
ggtaaagaaaatgccgagacaaaaaacacctggatcgaaagtgatgaacttgagctgctg
acagggaaatccccttcttttaaacaaatggttgcagctttccgctgtaaggcagaaggg
ctggaaatcaacggctggtggcaggatgtctatcgctggtacaatggactggaagaatgg
aaaccgcgctgtgaggcgcttcagacagcattttcagccagaaatattgccgagccggtc
agctcagcaaaaataacggcattgtatggcgcatcggctcataccagtgcatcgaggctc
gaaaaatatgcgtcctgtcagttcgcattttatcttcaatatggacttgaagccaaagaa
agaaagatttatcaatttagcccgccggatgtcgggacgtttatgcatgccgttcttgaa
agattttcgctggaggcggcacagcagcaaatctcttggcgagagatggaaagaccgtgg
tgccgggaaaaagtctcggcgattgtagacgaaatacttcagaatatgcagggttccgga
ctcacagcctcccaacggtatacttcacttgccttgagactgaaaagggttatcacgcgt
gcggtctggatgattgcggagcacctcaggcgcagcggctttgagccgttgggttatgag
cttggatttggcgagcgggaaaagttcccgccgattgtgattgaacttgattcaggccgg
aaggtatctttaagcgggaggattgacagggtcgatgcgctggaagctgaagaagggacc
tacctcagaatcgtggattataaatctgggagcaaggatttcaaactggccgacgtttat
tatggactgcagatccagttgttcacgtatctcgatgccctctggcagaacagcgggctg
gagacggaaaaaccagtcctgccgggaggcatcctgtatttccggatcgatgatcctatc
gtcagggccgacggcaggcttacggaggaagagatcgagctggacattatgaaacagctt
aagatgaagggcctgctgctcgcggatgtcaaattgattaaggaaatggatcggaccatc
gacggcacttcgctaattattccggccaggatcaataagggagaccttctgggcaaatca
tcggcagctaccctggaacaatttgaaatcctcagagaatatgtccgaaaccttctgaaa
aacttatgtgaggaaatgatgagcggcagtgtttcgatcacgccgtacaagaaaaagcgg
ataacctcgtgtacctactgctgctacgcagcagtctgccaatttgatccggccagaaag
gaaaacagcttccggttgctgaccgaccgtggggatgaggaaatctggaacgatatcatg
aaggcggaacaaaatcatgactga
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