Dehalobacter sp. CF: DCF50_p2484
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Entry
DCF50_p2484 CDS
T02279
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dec
Dehalobacter sp. CF
Pathway
dec03420
Nucleotide excision repair
dec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCF50_p2484
03430 Mismatch repair
DCF50_p2484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2484
Enzymes [BR:
dec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCF50_p2484
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCF50_p2484
MMR (mismatch excision repair)
Other MMR factors
DCF50_p2484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD_C_2
UvrD-helicase
AAA_19
Viral_helicase1
DEAD
PhoH
SLFN-g3_helicase
AAA_16
nSTAND3
ResIII
PEP-utilisers_N
Motif
Other DBs
NCBI-ProteinID:
AFV06487
UniProt:
K4L5C1
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All DBs
Position
2547227..2549467
Genome browser
AA seq
746 aa
AA seq
DB search
MERDRLDQDFEIRRLEQVLAIAREQLDCALQKSEENKEAIIAAKLDMWEDTSRSISGLWN
MDNFHELVELSQYANPVSERVSDYERDAAKILALKRLLYSPYFARIDFQFEGEELLEPVY
IGRSSLQDGLTRDMVVYDWRSPIASVFYRFGPGKAFYESPGGKITGEVHLKRQYEIKDGK
LQYFFDADIQIIDEFLRELLSRNASPKMKTIVETIQKDQDLVIRDLEMDLLMVQGAAGSG
KTSVALHRAAYLMYQGLAAKLASNEIVIISPNTLFEQYIANVLPELGEKNVQSLVFEEIF
GKVLQTDSIQSRNQYWESLLSPGQNGGSIAKSSMAFKGSGLFAEILRRFIKDLPYRWLPF
ADIYYDGKIVANRQLLKTKILRGGQEFLLSVRLKQLEASILQIVRELRPSRLEKLKKFIQ
AKPEHEFEVEEGTRRLSILESAALLKKIRSFTELDCPELYRKPFSDKSYFYHLAEGLELP
DCIEEILDYTRENLQKDGLLYDDALALTFLHLHIKGYTAYRDIKQVVVDEAQDYDPLHFE
ILHGLFPKAHYTILGDIHQTIGKQEDSARYEQIGKIFARPKSTLVTLDKSFRSTREILAY
SARFLDQSVKLHSFGRSGDAPAVFVAPNRAALTALLLAEIKTCREKGYQSIGLICKTEYD
ALALYEQLKDQSDIQLLKGDVQFDLSGVFLIPVYLAKGLEFDAVLICEADQEHYHSADDK
NLLYIACTRALHRLNLFYTGEISPLL
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgggaccgccttgatcaagattttgaaatcagacgcctggagcaggtgctggct
attgcccgggaacaattagactgcgccctgcaaaagagcgaagaaaataaagaggccatt
attgccgcgaagttagatatgtgggaagatacttcccgctccatctccggcctttggaat
atggataattttcatgagcttgtcgagttgagccagtacgccaatccggtgtcggaacgg
gtgtcggattatgaacgggatgccgctaagatcctggctttaaaaagattgctctattcc
ccctactttgctcggatcgattttcagttcgagggtgaggagctgttagagcccgtctat
atcgggcggtcttcgctgcaggacggcctgacccgggatatggttgtctatgactggaga
tctcccatcgccagtgttttttaccgctttggtccggggaaagcgttctatgagtcaccg
ggcggtaaaataacgggagaggtgcatttaaaacgccaatacgagatcaaagatggcaaa
ctgcaatatttcttcgatgcggatattcaaatcattgacgaattcctgcgcgaactgctt
tcccggaatgcttcccctaaaatgaaaaccatcgtcgaaaccatccagaaagaccaggat
ctggtgatccgcgatctggaaatggatttactgatggtccagggagctgcgggaagcggc
aaaacttcggtggcgctgcaccgcgcggcttatctgatgtaccaggggctggcggccaag
ctggcttccaatgagattgtgattatttctcccaacaccctgtttgaacaatacatcgcc
aatgtcttgcctgagctgggcgaaaagaatgtccaatcgctcgtctttgaagaaatattc
ggcaaggttttgcagactgattctatccaaagcaggaatcaatattgggaaagcctgctc
tcccccggccaaaacggcggaagtatcgccaaaagcagcatggccttcaaaggttccggc
ctgtttgctgaaattttgagacgtttcattaaggatttgccttatcgctggctgccgttt
gctgatatttattatgacggaaagattgttgccaaccggcaattgctgaaaactaagatc
ctgagaggcggtcaggaattcctgctgagtgtgcgtttaaagcaattggaagcgtcgatt
ctgcaaatcgtccgtgagctgcgtccgagccgtctggaaaagttaaaaaagttcattcag
gccaagcccgagcatgaattcgaagtggaagaaggtacccggcggttatccattctggaa
agcgccgccttgctgaagaagatacgaagctttaccgagctggattgtccggagctttac
cggaagccgttcagcgataaaagctatttttatcatttagccgaaggtctggagctgcct
gattgtatagaagagattttggactacaccagggaaaacctgcaaaaggatggtttactt
tatgatgacgccctggcccttacttttctccatctccatatcaaaggatataccgcttac
cgtgatatcaagcaagttgtggtcgatgaagcccaggattatgatcccctgcattttgaa
atactccacggtctgtttcccaaagcgcattatacgatcctgggcgatattcatcagacc
atagggaagcaggaagattccgcacgctatgaacagattggcaagatattcgctagacct
aaatccacgctggtgactttggacaaaagcttccgctccaccagggagatcttggcgtac
agcgccaggtttcttgaccaaagcgttaagctccatagttttgggagatcgggagatgcg
cctgccgtgtttgtggcgccgaaccgggcggctctgactgctctcctgcttgcggaaatt
aaaacctgccgggaaaagggttaccaatcaatcgggttaatctgtaaaacggaatacgac
gcccttgccttatatgagcagctcaaggaccaaagcgatattcagctgctaaaaggtgat
gttcaatttgatttaagcggcgtattcctgatcccggtctatctagccaaaggcctggaa
tttgacgccgtactgatctgcgaggccgatcaggagcattatcacagcgctgatgataag
aaccttttatatattgcctgtacgcgggcgctgcatagactgaaccttttttataccgga
gagatcagcccgcttttataa
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