Dehalobacter sp. CF: DCF50_p2846
Help
Entry
DCF50_p2846 CDS
T02279
Symbol
uvrA
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
dec
Dehalobacter sp. CF
Pathway
dec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCF50_p2846 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p2846 (uvrA)
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCF50_p2846 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCF50_p2846 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_16
nSTAND1
AAA_21
AAA_33
ATPase
nSTAND3
AAA_25
AAA_23
NACHT
AAA_22
Viral_helicase1
cobW
Zn_Tnp_IS91
MeaB
YhfH
DnaJ_CXXCXGXG
DUF7391
Motif
Other DBs
NCBI-ProteinID:
AFV06849
UniProt:
K4L8Q1
LinkDB
All DBs
Position
complement(2947245..2950067)
Genome browser
AA seq
940 aa
AA seq
DB search
MTQDYIKVRGARVHNLKNIDVDIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDYIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGHP
HCPNCGKEISQQTVQQMVDQLLTYPEKSRLQILAPVIKGKKGEHVRTLEQVRKSGYVRVR
VDGEVRDLSEEILLEKNKKHSIDVVVDRISLKPDSTARLADSIETALKLAEGTVLVDIVG
REEILFSENFACPDCGIAIDEIAPRLFSFNSPFGACPSCTGLGANLEADIDLIISDRSKS
INEGAIVPWAKSSSSYYPALLQGLAEKFGFSLDCPMKDLTPEQWQALVYGSDSPIKFSYY
NVFDELKYWKAPFEGLVPYFNRRYKESTSDYVRNEIEGLMTEKPCPACQGKRLKPEALAV
KINRLSIYELTRLTVMESLDFFKKIVLSEKEQMIARQVLKEIKERLGFLVNVGLDYLTLD
RAAGTLSGGEAQRIRLATQIGSSLTGVLYVLDEPSIGLHQRDNAKLLDTLKKLRDLGNTL
LVVEHDEDTLLEADHIIDIGPGAGAHGGHIVAQGDMEAIKACEASITGQYQTGRKKIEVP
AERRQPNGKWLEVVGAAQNNLKQLHAKFPLGVMTCVTGVSGSGKSTLVNEILLKGLQTEL
KISSKVRPGVYRELKGLEYVDKVIDIDQSPIGRTPRSNPATYTGLFDFIRDLFSQTPEAK
IRGYKQGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCRGQRYNRETLEVSFKG
KNIAEILDMTVAEAVEFFAAVPRIARKLQTLQDVGLGYIKLGQPATTLSGGEAQRVKLAT
ELSRRSTGKTLYILDEPTTGLHVADVDKLLKVLQRLVEAGDSVLIIEHNLDVIKTADYII
DLGPEGGSRGGEIVAIGTPEEIAAVPASYTGQFLGKHLGI
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggattatatcaaggtacggggcgcccgtgtccataacctcaaaaacattgat
gtcgatattccgcgggataagctcgttgttattaccggcctgtccggttcaggaaaatca
tctctagcttttgacaccatttacgctgaaggccaaagacgctatgttgagtccctttca
gcttatgcccgccagttcctggggcagatggacaaaccggatgtcgattatattgaagga
ctatcacccgcaatctccattgatcagaagacgacaagccgcaatccacgatcaaccgta
ggaacggtaacggaaatctatgattatctcagactgctttatgcaagggtcggccatccg
cattgtccgaactgcggcaaagagatcagtcagcagaccgttcaacagatggtcgatcaa
ttgctgacctatccggagaaaagccgtctgcagattctggcaccggtaatcaaagggaaa
aaaggagagcacgtccggacactcgaacaggtcagaaaaagcggctacgtccgggtgagg
gtggacggagaagtcagagacctcagtgaggaaatacttctcgaaaaaaacaaaaagcac
tccattgatgtggttgtcgacagaatttccctgaagcccgacagcaccgcccggctcgcc
gactcaatcgagactgcactgaagctcgccgaaggaacggtcctggtcgacatcgtgggt
cgggaagagattctgttcagcgaaaattttgcgtgcccggactgcggaattgcaatcgac
gagattgctccaagactattttcattcaacagcccattcggggcctgtccgtcgtgtacc
ggactcggagcgaatctggaagcagatatcgatctgattatctccgaccgcagcaagtct
atcaatgaaggtgcaatcgtgccgtgggcgaaatcgagttcgagctattatcctgccctg
ctgcaggggctggccgaaaaattcgggttcagtctggactgcccgatgaaagatctgaca
ccggagcagtggcaggccctggtctatggctctgattcaccgattaaattcagttactac
aatgtctttgatgaattaaaatattggaaagcgccttttgaaggactggtgccgtatttt
aaccgccgatataaggaatcgacctcggactatgtccggaatgaaatagaaggtctgatg
acagagaaaccgtgcccggcctgtcagggcaagaggctgaaaccggaagcgctggctgta
aagattaatcgtttatccatctatgagctgaccaggcttaccgtgatggagtccctggac
ttttttaaaaagatcgttctaagtgaaaaggaacagatgattgcgcgtcaggttttgaaa
gaaatcaaagaaaggcttggttttcttgttaatgtcgggctggactacctgactctggat
cgtgccgccgggacactttcaggtggggaggcccagcggatccgtctggccacgcagatt
ggctcgagtctcaccggcgtgctgtatgtgctggatgagccaagcatcggtctgcaccag
cgcgataacgcaaaactgctggacacattgaaaaaactgcgggacttggggaacacactt
ttggtcgtggaacatgatgaggatactcttttggaggccgaccatatcattgatatcggc
cctggcgccggagcccatggcgggcatattgtggcgcagggagatatggaagcgatcaag
gcgtgtgaagcttcgattaccgggcagtatcaaaccggtcgtaaaaagattgaagtcccg
gctgaacgccgccagccgaacggaaaatggcttgaagtagtcggcgcagcccagaacaac
ctgaaacagctccatgccaaattcccattgggtgtaatgacttgtgtaacaggcgtgtcc
ggatcgggcaaaagcacgctggtcaacgaaatattactcaaaggacttcagacggaactc
aaaatcagcagcaaagtccgtcccggggtttaccgggagctcaaaggactggagtatgtc
gacaaggttatcgacattgatcagtctccgatcgggcgtacaccgcgatccaatccggcc
acgtacaccgggctatttgattttatccgggacctcttttcccagacgccggaagcgaaa
atcagaggctataaacaaggccggttcagcttcaatgtcaaaggcggacgctgtgaggca
tgccggggagacggaatcataaaaattgaaatgcattttcttccggatgtctatgtcccg
tgtgaggtatgccgcgggcagcgttacaaccgtgagaccctggaggtaagctttaaaggg
aaaaatattgcggagatcctcgacatgacggttgctgaagcggttgaatttttcgcggct
gtacctcggattgctcggaaactgcagacactgcaggatgttggcttaggctacatcaag
cttgggcagccggctacgaccctttccgggggagaggcccagcgcgttaagttggctacg
gagctcagccgccgcagtacggggaaaacgctgtatattttggatgaaccgacgaccggt
ttgcacgtcgccgatgtggataagctgttaaaggtcttacagcgcctcgttgaggcgggc
gattccgttctgatcattgagcacaatctggacgtgattaaaaccgccgattatatcatc
gacctcggtccggaaggcggcagccggggaggcgagattgtcgcaattggtacgcccgag
gaaatcgccgcggttccggcctcgtatactggacagtttttaggaaaacatctgggaatt
tag
DBGET
integrated database retrieval system
