Dehalobacter sp. CF: DCF50_p973
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Entry
DCF50_p973 CDS
T02279
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dec
Dehalobacter sp. CF
Pathway
dec03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DCF50_p973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dec03400
]
DCF50_p973
Enzymes [BR:
dec01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DCF50_p973
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DCF50_p973
DNA repair and recombination proteins [BR:
dec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DCF50_p973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AFV04978
UniProt:
K4LEH4
LinkDB
All DBs
Position
complement(1029621..1030442)
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AA seq
273 aa
AA seq
DB search
MPELPEVESIRLSLAARILGKTIEDVEVRWLPAAVSLADEDFSALVRNRTIESLDRRGKY
LLMNLSHGLTMIIHFRMTGRLIYYPEQHEPDKHTHVVFRLDQGELHYSDIRKFGRIQLVS
FKMAFKAACLAKLGPEPLDESFAFDQLGMRLARKKSTIKAALLDQTVVAGIGNIYADEAL
FRAGILPDRNTASLKVSEIILLYDAICEVLQEGITAGGTSFRDYRDADGKKGAFQENLMV
YGRSGQECKYCGGQLAKIKVAGRTTVYCPNCQK
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaagtagaaagtatccggctgtccctggctgcaaggatcttggga
aagacaattgaagatgtcgaagtccgatggcttccggcagcagtttctctggcggatgag
gatttcagcgctttggtcaggaaccggacgattgaaagccttgacagacgtggcaagtat
ctgctcatgaacctgagtcacggccttacgatgatcattcatttcaggatgaccgggcgt
ttgatctattatcctgagcagcacgagccggataaacatacgcatgttgtgtttaggctc
gatcagggagaacttcattactccgatatccggaaatttggcagaatacagctggtgtct
tttaaaatggcatttaaggctgcctgcttggctaaacttgggccggaaccgctggacgag
tcatttgcatttgatcagctcgggatgcgactggccaggaaaaagagtacgatcaaggct
gcgctgctggatcagaccgtcgtagccggtatcggaaatatttatgcggacgaggccctg
ttccgcgcaggtattttgccggataggaatacggcttcgttaaaggtgtcggagattatt
ctgctttacgatgcgatctgtgaggttctgcaggaaggaatcacggctggcggaacatca
tttcgtgattatcgtgatgcagacggcaagaagggtgcatttcaggaaaatctgatggtt
tacggacgcagcggtcaggagtgtaaatattgtggaggccaattggccaaaatcaaagta
gccggaaggacaacggtgtactgtccgaactgccagaaatag
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