Dechloromonas sp. TW-R-39-2: GBK02_03775
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Entry
GBK02_03775 CDS
T08942
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GBK02_03775 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dech03021
]
GBK02_03775 (rpoC)
03400 DNA repair and recombination proteins [BR:
dech03400
]
GBK02_03775 (rpoC)
Enzymes [BR:
dech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GBK02_03775 (rpoC)
Transcription machinery [BR:
dech03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GBK02_03775 (rpoC)
DNA repair and recombination proteins [BR:
dech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GBK02_03775 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QRM18574
UniProt:
A0A974Y6S5
LinkDB
All DBs
Position
773711..777922
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVTAEEEFDAITIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRDRMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVCDPGMVSSLQRAQLLTEEQYLDMMEEHGDEFQAL
MGAEGIRELLRNLDVPSEVESLRAELEVTGSEAKNKKLAKRLKILEGFMKSGIKPDWMIL
EVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
QLKLHQCGLPKLMALELFKPFIFHKLEVLGYATTIKQAKKMVEGQEPVVWDILEDVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLSPANGQPIIVPSQDIVLGLYYATREKINGKGEGMYFADTNEIERAMAA
KELDVHSRISVRLPQYEISAVDGEWEEKIVRIETTAGRALLSKILPKGLPFKVLDRALKK
KEISKLIDESFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMLVPAKKYEIIAAAE
AEVKEIETQYTNGLVTNGERYNKVVDIWGRTGDQVAKVMMDELGHEETIDRHGKKVKQDS
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTTNGFAVKALVEGGEVIEPLRER
ILGRVTVDDLIDPETQETVIFGGTMLDEDLVDLIDKLGIDEVKVRTPLTCDTRYGLCAQC
YGRDLGRGTMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVASQVESKSAGTV
RFTANMRYVTSAKGEKVVISRSGEVLITDDHGRERERHKVPYGATLAADDGKSVKAGAKL
ATWDPHTRPIVTEYAGTVRFENVEEGVTVAKQVDDVTGLSTLVVIDNKRGGKAATKGIRP
VVKLLDQSGQEVKIAGSDHPVSIAFQVGSIISVLDGQQVGVGDVLARMPQESAKTRDITG
GLPRVAELFEARTPKDASVLAEVTGTISFGKDTKGKQRLVITDLEGVQHENLISKDKHVL
VHDGQVVNKGEKVVEGAPDPHDILRLQGIEALARYITDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVTIVEPGDTKFIKSEQVERAELLAENDRANAEGRLPATFDNMLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRKAQSAGGN
ASASSVSEAPAVETVVQDADQAS
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctattcaagcaggtaaccgccgaagaggaattcgacgcgatt
accattggtctcgcctcgcccgaaaagatccgttcctggtcgtatggcgaagtcaagaag
ccggaaacgatcaattaccgtaccttcaagccggagcgtgatggcctgttctgtgccaag
atctttggcccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggttcgtcgtgac
cgtatgggtcacatcgaactggcctcgccgaccgctcacatctggttcctgaagtccctg
ccgtcccgtctcggcatggtgctcgacatgacgctgcgcgatatcgaacgcgtcctgtac
ttcgaagcctatgtcgtttgcgatcctggcatggtgagcagcctccagcgtgcccagttg
ctgaccgaagagcagtatctggacatgatggaagagcatggcgacgaattccaggcgctg
atgggcgctgaaggtattcgcgaattgctgcgcaatctggacgtgccgagcgaagtagaa
tcgctgcgtgccgaactggaagtgaccggttccgaagccaagaacaagaagctggccaag
cgtctgaagattctcgaaggtttcatgaagtcgggcatcaagccggactggatgatcctc
gaagtcctgccggtgctgccgccggacctgcgtccgctggttccgctcgacggtggccgc
ttcgccacgtccgacctgaacgacttgtatcgccgcgtgatcaaccggaataatcgtctc
aagcgcctgcttgagctgaaggctccggaaatcatcgtgcgcaacgaaaagcgcatgctg
caggaatcggtcgactcgctgctcgacaacggtcgtcgcggcaaggccatgaccggcgcc
aacaagcgtccgctcaagtcgctggccgacatgatcaagggcaagggcggtcgtttccgt
cagaacttgctcggtaagcgcgtcgactactcgggccgttcggtcatcgtggttggtccg
cagctcaaattgcatcaatgcggcctgccgaagttgatggcgcttgaactgttcaagccc
ttcatcttccacaagctggaagtgctcggttacgccaccaccatcaagcaagccaagaag
atggtcgaaggtcaggaaccggttgtttgggacatcctcgaagatgtcatccgcgaacat
ccggtcatgctgaaccgcgcaccgacgctgcaccgcctcggtatccaggcattcgaaccg
accctgatcgaaggcaaggccatccagttgcacccgctggtttgcgcggcattcaatgcc
gacttcgacggtgaccagatggccgtccacgtgccgttgtcgctcgaagcccagatggaa
gcccgcaccttgatgttggcctcgaacaacgtgctgtcgcctgccaacggccagccgatc
atcgtgccgtcgcaggacatcgtgttgggtctgtactacgccacccgcgaaaagatcaat
ggtaagggcgagggtatgtacttcgccgataccaacgaaatcgagcgtgccatggccgcc
aaggagttggacgttcactcgcgcatctctgtgcgtctgccgcaatacgagatttctgcg
gtcgacggcgaatgggaagagaaaatcgtccggatcgaaaccacggccggtcgtgccctg
ctgtccaagattctgccgaagggcctgcctttcaaggtgttggaccgcgcgctgaagaag
aaggaaatctccaagctgatcgacgaatccttccgtcgttgtggcctcaaggaaaccgtc
gtcttcgccgacaagttgatgcagaacggttatgccctggcgacccgcgccggcatctct
ttctgttccgacgacatgctggttccggccaagaaatacgaaatcatcgctgccgcggaa
gcggaagtgaaggagatcgaaacgcaatacaccaacggactggtgaccaacggcgaacgc
tataacaaggtcgtcgatatctggggccgcactggcgaccaggtcgccaaggtgatgatg
gacgaactcggccacgaggaaaccattgaccgtcacggcaagaaggttaagcaggattcg
ttcaactcgatctacatgatggccgactccggcgctcgcggctccgcagcccagattcgt
cagctggccggtatgcgcggcctgatggccaagccggatggctcgattatcgaaacgccg
atcacgaccaacttccgcgaaggtctgaacgttctccagtacttcatctcgacccacggt
gctcgtaagggtctggccgatacggcgttgaagaccgctaactctggctacctgacccgc
cgtctggtcgacgtgacccaggatttggtcattaccgaagatgattgcggtacgaccaac
ggctttgccgtcaaggcactggttgaaggcggtgaggttatcgaaccgttgcgcgagcgt
attctcggtcgtgtcacggtcgacgacctgattgacccggaaacgcaggaaaccgttatt
ttcggcggcaccatgctcgacgaagacctggttgatctgatagacaagctcggtatcgac
gaagtcaaggttcgtacgccgctgacctgcgatacccgctacggtctgtgcgcccagtgt
tacggtcgtgacctcggtcgcggcacgatggtcaatgccggtgaagctgtcggcgttatc
gctgcacagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacgtcggt
ggtgcggcatcccgtgctgcagttgcttcgcaggttgagtccaagtcggccggtacggtt
cgctttaccgccaacatgcgctacgtcaccagcgccaagggcgagaaggttgttatttcc
cgttctggcgaagtgttgattaccgacgaccatggtcgtgagcgtgagcgtcacaaggta
ccgtacggtgcaacgctggctgctgatgacggcaagtccgtcaaggccggtgccaagctg
gctacgtgggatccgcacacccgtccgatcgtcaccgaatatgccggtaccgttcgcttc
gaaaacgttgaagagggcgttaccgttgccaagcaggttgatgatgtaacgggtctgtcc
acgctggtggttatcgacaacaaacgtggtggcaaggctgcaaccaagggcattcgtccg
gtcgtcaagctgcttgaccagagcggtcaggaagtcaagattgcaggcagcgaccaccca
gtttccatcgctttccaggtcggctcgattatttccgtgcttgatggtcagcaggttggt
gtgggtgatgtgctggctcgtatgccgcaggaatctgccaagacccgcgacattaccggc
ggtctgccgcgcgttgcggagctgttcgaagcccgtacgccgaaggatgcttcggttctg
gccgaagtcaccggcacgatcagctttggtaaggacacgaagggcaagcagcgtctggtg
atcaccgatcttgaaggtgtgcagcacgaaaacctcatctccaaggacaagcatgttctg
gtgcacgatggtcaagtggtcaacaagggtgaaaaggttgtcgaaggcgcaccggatccg
cacgacatcctgcgtctgcagggtatcgaggcgctggctcgctacatcaccgatgaagtc
caggacgtttatcgtctgcaaggcgtgaagatcaacgacaagcacattgaagtgattgtc
cgtcagatgctgcgccgcgtgaccatcgttgagccgggtgataccaagttcatcaagtcc
gagcaggtcgagcgtgcagaactgctggccgagaatgaccgtgccaatgccgaaggtcgc
ctgccggctacgttcgacaacatgctgctgggtattaccaaggcatcgttgtcgaccgac
tcgttcatttctgccgcttcgttccaggaaacaacgcgtgttcttaccgaggctgccatc
atgggcaagcgcgacgaactgcgtggtctcaaggaaaacgttatcgtcggacgtctcatt
ccggcaggtaccggtttggcttaccaccgcagtcgcaaggctcagtctgccggtggcaat
gcttctgcatcgtctgtcagtgaagctccggcagtcgaaactgttgtacaggacgctgat
caggcatcctga
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integrated database retrieval system
