Dechloromonas sp. TW-R-39-2: GBK02_04830
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Entry
GBK02_04830 CDS
T08942
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03030
DNA replication
dech03430
Mismatch repair
dech03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBK02_04830 (dnaE)
03430 Mismatch repair
GBK02_04830 (dnaE)
03440 Homologous recombination
GBK02_04830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dech03032
]
GBK02_04830 (dnaE)
03400 DNA repair and recombination proteins [BR:
dech03400
]
GBK02_04830 (dnaE)
Enzymes [BR:
dech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GBK02_04830 (dnaE)
DNA replication proteins [BR:
dech03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GBK02_04830 (dnaE)
DNA repair and recombination proteins [BR:
dech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GBK02_04830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
DUF3173
Motif
Other DBs
NCBI-ProteinID:
QRM20958
LinkDB
All DBs
Position
992735..996217
Genome browser
AA seq
1160 aa
AA seq
DB search
MAPMNPPRYVPLRLHSEYSVTDGIVRIGDAVKRAASDGMPAMAVTDLGNLFGLVKFYSGA
RGKGVKPIAGADVWIANPEAPDDASRLLLLVRNRTGYQQLCELLTRAYLVEGRRDRAEIR
REWFAELGSDGLIALSGAHLGDVGEALVNGNFELAGERARAWEAIFPGAFYLEVQRYGQP
QQEAVVQATADLAGELGLPLVATHPIQFLDQDDFQAHEARVCIAEGYVLGDHRRPKIYTD
QQYFKNQAEMVELFADLPEALENTLEIARRCNIEMTLGKNFLPDFPIPPGMTDGEYLVEE
AKKGLEIRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFPGYFLIVADFINWGKQNG
VPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVSMPDFDIDFCQDNRWRVI
EYVREHYGPQAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPIVQNKPVSLAE
ALEQEPQLKEMMEGDGDGETVRELFDLAGRLEDLTRNVGMHAGGVLIAPGKITDFCPIYQ
ATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYIRRMTGEKLDLMSLGFKD
PAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFIL
RKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAE
EMAAHRATIAEGAKKKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHH
CAAFMAATMSSDMDNTDSVKIFYEDAVGPANKLKMLGPDVNASNYRFEPVDRSTIRYGLG
AVKGTGEQAVNVILKAREEGGPFKDLFDFCKRCDKRMVNRRTTEALIKAGAFDGIAPKVA
GSEVPDRYRLLASVGVAMEFADQAERNAMQTSLFDIGNVAEEHAPQYLTVKPWDEKEKLM
QEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKETTALAGVVVGVRTQMTRRGKML
FVQLDDGTGMIEVTVFNELFEAERAKIVTDEVLIIEGRVRYDEFSGSNSVTADKLMTLGE
ARARFAKHLQLRMGAAADARKLKSLLQPFVPGTAQVRIRYRNKDAECELVLGEKFRVRLD
DLLLEALTGWLQPENVEIIY
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
attgcacccatgaatcccccgcgctacgttcctcttcgcctccattccgaatattcagtg
accgacggcatcgtccggatcggtgatgccgtcaaacgtgcagccagcgatggcatgccg
gcgatggccgtgaccgacctcggcaatctcttcggtctggtcaagttttattccggcgcg
cggggcaagggcgtcaagccgattgccggtgccgatgtctggattgccaatccggaagcg
ccggatgatgcttcgcgcttgctgctgttggtcagaaaccgcaccggttatcagcagcta
tgcgagttgctgacgcgggcttatttggtcgaaggccggcgcgatcgtgccgagatccgg
cgcgagtggtttgccgaactagggagcgatggcttgattgctttgtccggcgcgcatctc
ggcgatgtcggggaagcactggttaacggcaattttgaactggcgggtgagcgggccaga
gcctgggaggccattttccccggggctttctaccttgaagtgcagcgctacggtcaaccg
cagcaggaggccgttgttcaggcaacggccgatctggctggcgagttggggctgccgctg
gtggcaacgcatcccatccagtttctcgatcaggacgacttccaggcgcatgaagcgcgg
gtttgcattgccgagggttatgtactcggcgatcatcgccggccgaaaatctataccgac
cagcaatatttcaagaaccaggccgaaatggtcgagctgtttgccgacctgccggaggcg
ttggaaaacacgctggaaatcgcccggcgctgcaatatcgagatgacgctgggcaagaat
tttctgcctgacttcccgattccgccgggcatgaccgacggtgaatatttggttgaagaa
gcaaagaaggggctggaaatccgtcttgccgagctgtatccggacccggaggtgcgccag
cagcgcaggccggaatacgatgagcgtctggtttttgagtgtaaaaccattctccagatg
ggcttccccggttacttcctgatcgtggcggacttcatcaactggggcaagcaaaacggt
gtgccggttggcccggggcggggttcaggtgccggttcgctggtcgcctactcgctgcgc
attaccgacatcgatccgctggaatacgcgctgctgttcgaacgcttcctgaatccggaa
cgggtttccatgcccgacttcgatatcgacttctgtcaggacaaccgctggcgcgtcatc
gaatacgtgcgcgagcactacggcccgcaggcggtttcgcagattgccaccttcggtacg
atgtcctccaaggcggtgatccgcgacgtcggccgcgtgttcggcctgccgtactcgatg
tgcgaccgcatttccaaactgatcccgattgtccagaacaagccggtgtcgctggccgag
gcgctggagcaggagccgcagctcaaggaaatgatggagggcgacggcgacggtgaaacc
gtgcgcgagctgttcgatctggccggtcgactggaggatttgaccagaaacgtcggcatg
cacgccgggggcgtgctgatcgcgccgggcaagatcaccgatttctgtccgatttatcag
gccaccggcgccgatgcttcgccggtgtcgcagttcgacaaggacgacgttgaaaaagcc
gggctggtgaagttcgactttttgggtctgcgaaatctgaccattatcgagctggctgtt
gagtacatccgccggatgaccggcgagaagctcgatttgatgtcgctcggcttcaaggac
ccggccgcctaccagattctgaaagatgccaatacaacagcgatcttccaggttgaatcg
gagggcatgaagaagctgctcaagaagctggcgcccgaccgttttgaagacatcatcgct
gtgctggcgctctatcgtcccggtccgttgggctctgggatggtggatgacttcattctg
cgtaaaaaaggtcagcagaagatcgactatttccaccccgacctgaccgcctgtctgtcg
ccgacctacggcgttatcgtgtatcaggaacaggtgatgcagatttcgcagatcatcggc
ggctacacgctcggtggcgccgacatgctgcgtcgggcgatgggcaagaagaaagccgag
gaaatggccgcccaccgggcgacgattgccgaaggggcgaagaaaaaaggttacgacccg
gcgctggccgagcaactgttcgacctgatgaccaagttcgcggaatacggcttcaacaag
tcgcacaccgccgcctacgccgtcgtcacctatcacaccgcctggctcaaggcgcaccat
tgcgcggccttcatggcggcgaccatgtcgtccgacatggacaacaccgactcggtcaag
atcttctacgaagatgccgtcgggccggccaacaagctcaagatgctcgggccggatgtc
aatgcctcgaattaccgtttcgagccggtcgaccgcagcacgatccgctatggcctcggt
gcggtgaaaggcactggcgagcaggccgtgaacgtcattttgaaggcacgcgaagaaggc
gggccgttcaaggatttgttcgatttttgcaagcgttgcgacaagcgcatggtcaatcgc
cggacaaccgaggcgctgatcaaggctggggcattcgatggcatcgccccgaaggttgcc
ggcagcgaagtgccggatcgctatcgcttgctggcatccgtcggcgtggcgatggagttc
gctgatcaggccgaacgcaatgcaatgcagacgagtttgtttgatatcgggaatgtggcc
gaggagcacgcgccgcaatatctcactgtcaagccgtgggatgaaaaggaaaagctgatg
caggagaagacggcgctcggcttcttcttctccggccatccctacaacacctgcaagaaa
gagttgtcgcgcttcatccgccggccgctgaaccgtctggaaccggccaaggaaacgacg
gcgctggccggtgtggtcgttggcgtgcggacccagatgacccggcgcggcaagatgctg
ttcgttcagctggatgatggtaccgggatgatcgaagtcaccgtcttcaacgaattgttc
gaggctgaacgagccaagatcgttaccgatgaggtgctgatcattgaggggcgcgttcgc
tacgacgagttttcaggcagcaacagcgtgacggccgacaagctgatgactttgggcgag
gcgcgggcgcgtttcgccaaacacctgcagttgcggatgggcgcggcggcagatgcccgc
aagttgaagtcgctactgcagccgtttgtgccgggaacggcccaggttcgtattcgctat
cgcaacaaggatgctgaatgcgaactggtgctgggcgagaagttccgcgtcaggctcgat
gatctgctgctggaggcgctgaccggctggttgcagccggagaacgtcgaaatcatctat
tag
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