Dechloromonas sp. TW-R-39-2: GBK02_07320
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Entry
GBK02_07320 CDS
T08942
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBK02_07320 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dech03019
]
GBK02_07320 (rnr)
03016 Transfer RNA biogenesis [BR:
dech03016
]
GBK02_07320 (rnr)
Enzymes [BR:
dech01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GBK02_07320 (rnr)
Messenger RNA biogenesis [BR:
dech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GBK02_07320 (rnr)
Transfer RNA biogenesis [BR:
dech03016
]
Prokaryotic type
tRNA degradation factors
GBK02_07320 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
ATP-synt_ab_Xtn
CSD
Motif
Other DBs
NCBI-ProteinID:
QRM19216
UniProt:
A0A974SVF2
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Position
1539976..1542381
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AA seq
801 aa
AA seq
DB search
MSRKKLSKIRKSDPFFERESARYDFPLPSREYVTQVMTDAGRPLLFDDLVELLDIAPSER
EMFLRRLGAMEREGQLLRNRKGDYILPERASLTPGKIQGHQDGYGFLVPDDGGADIFLDQ
HQMGKVLHGDRALVRVTGLDRRGRPEGSIVEVTERANSRVVGRVLIEHGVVVVIPENKRI
AQDILVPPEKKGKIKAESGQVVMVEIIEQPSKFSQPIGRIIEVLGNYADPGMEIEIALRK
HDLPFEFSKAVLAENKALPDKVKKTDIKGREDLRELPLVTIDGETARDFDDAVFCEKKGR
GWRLVVAIADVSHYVRPGMALDKEARERGNSVYFPRRVIPMLPEKLSNGICSLNPDVERM
AMVCDMDISAAGKIGEYRFYPAVFRSHARLTYNQVWSWLSGDVVPESEVHIAIQPQVKNL
YKLYAALHKARGLRGAIDFETTETQMLFNQQGKIENIVPVVRNDAHRIIEECMLAANVCA
SDFLATNKQVCLYRIHEAPGDEKLKNLRAFLGEFGMALGGGDDPRAKDYAVLLEKVKQRP
DFHLLQTVMLRSLRQAMYSPDNVGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAKEK
YVPDESWEDIGLHCSGTERRADEATRDVENWLKCFYMKERVGEVFDGTISAVTAFGIFVA
LDAVYVEGLVHVSELGQDYFQFDNIKHQMLGERTGERFRLGDRVKVKLVRADLETNKIDF
VLIREGQPANGHKSVARGGQKVSARAPLKASVKPVRKVQAETPVKRPAKALPKAKSTGKA
APKRSGKAVAKPASKKAAKRR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaaaaaactttcaaagattcgtaagtcagacccgttttttgagcgtgaatcg
gcacgctatgattttccgttgccatcccgggagtacgtcactcaagtgatgactgatgcg
gggcgccctttgttgttcgacgatctggttgagttgctggatattgcaccgagtgagcgc
gaaatgtttctgcggcgcctgggggctatggaacgtgaagggcagcttttacgcaatcgc
aaaggtgattacatcctgcctgaacgggcgagtttgaccccggggaaaattcaggggcat
caggatggttatggttttctggtgccggatgatggaggtgccgatatctttctcgatcag
caccagatgggcaaagttctccacggggatcgtgccctggttcgggttaccggcctggac
cggcgcggtcgtccggaaggctcgattgtcgaggtgactgaacgagccaattcgcgcgtt
gtcggtcgcgtcctgattgagcatggcgtagttgttgtcatccccgagaacaagaggatt
gcccaggatattctggtgccgcctgaaaagaagggaaaaatcaaggctgagtcaggccag
gtggtgatggttgagattattgagcagccgagcaaattctcgcagccgattggtcgcatc
atcgaagtcctgggcaattacgccgatccgggcatggagatcgagattgccttgcgcaag
catgatctgccgtttgagttttccaaggctgtgctggcggaaaacaaggccttgcctgac
aaagtcaagaaaacggatatcaaggggcgtgaagatctgcgcgaattgccgctggtgacc
atcgatggtgaaacggcgcgcgatttcgatgatgccgtattctgcgaaaagaaaggccgt
ggctggcgtctggttgtagcgattgccgatgtctcccattacgtcaggccaggcatggcg
ctcgacaaggaggccagggagcggggcaattccgtttattttccgcgtcgcgtcattccc
atgctgccggaaaagctgtcgaacggcatttgctcgctgaatcccgatgttgaacggatg
gccatggtttgcgacatggatatcagcgcagccgggaaaataggcgagtatcgtttttac
ccggcagtcttccgttcgcatgcccggctgacctataaccaggtctggtcatggttgtca
ggtgacgtggtgccggagagcgaggttcacatcgccattcagccgcaggtgaaaaatctg
tacaagctttatgccgccttgcacaaggcgcgtggtttgcgcggagccatcgatttcgaa
acgaccgaaacgcagatgctgttcaatcagcagggcaagatcgagaatatcgtgccggtt
gtccgtaatgacgcacatcgcatcatcgaagagtgcatgttggcagccaatgtctgtgct
tcagactttttggccacgaacaaacaggtttgcctgtaccgaattcacgaagcaccgggc
gatgaaaagctcaagaacctgcgtgccttcctgggtgagtttggtatggcactgggcggg
ggcgacgatccgcgtgccaaggactacgctgttttgcttgaaaaagtgaaacagcgcccg
gatttccatctgctgcaaacggttatgttgcgttcgttgcggcaggcaatgtacagcccg
gacaacgttggtcattttggtctggcttacgagcactatacccacttcacttcaccgatc
cggcgctatccggatttgctggtgcatcgggcgatcaaggcggtgctggccaaggaaaag
tacgtgccggatgaaagctgggaggatatcggcctgcattgttccggtaccgaacggcgg
gctgatgaagcaacccgtgatgtcgagaactggctgaaatgcttctacatgaaggagcgt
gtcggagaggtgttcgacgggacaatttcggccgtcaccgcctttggtatttttgtcgcg
ctcgatgcagtgtatgtcgaggggctggtccatgtttcagagttgggccaggactatttc
cagttcgacaacatcaagcatcaaatgctcggtgagcgaaccggtgagcgcttccggctt
ggcgaccgggtcaaggtcaagctggtcagggctgatcttgaaacgaacaagatcgatttt
gtcctgattcgtgaggggcaacctgccaacgggcacaagtctgtggccagaggagggcag
aaagtcagcgcccgggcgccgctcaaggcctctgtcaagccggtacgcaaggtgcaggca
gagacgccggtaaaacgtccggccaaggccttgccgaaagcaaaatcaacaggcaaggcg
gcacccaaacgctcaggcaaggccgttgccaagccggcatcaaaaaaggcagccaagcgg
cgttga
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