Dechloromonas sp. TW-R-39-2: GBK02_08525
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Entry
GBK02_08525 CDS
T08942
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBK02_08525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dech03019
]
GBK02_08525
Enzymes [BR:
dech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GBK02_08525
Messenger RNA biogenesis [BR:
dech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GBK02_08525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QRM19440
LinkDB
All DBs
Position
1802623..1803960
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AA seq
445 aa
AA seq
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MTFASLGLIDPLLHTLERLDYKTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
HRLVSEGPPVNANSVRVLVLVPTRELAEQVHASFREYGEGLPLRTYAVYGGVSINPQMMA
LRKGVDVLVATPGRLLDLHRQNAVKFTQVQALVLDEADRMLDLGFANELNAVFASLPKRR
QTLLFSATFSDEIRAMAAKLLDKPLSIEVSPRNTTVKSVKQWVVPVDKKRKSELFCHLLK
KRRWGQVLVFVKTRKGVEQLVETLLAMKISADSIHGDKPQASRQRALDSFKAGEVKILVA
TDVAARGLDIDDLPQVVNFDLPIIAEDYIHRIGRTGRAGATGEAISLVCADEVNLLSAIE
TLTKQTLVRHEEPGFEPDHRVPMTNGAGQVLKKPKKPKVPKSSGKGVPSNWVGFDDQPAG
RGRRGQARNAAAPAGRKPAAKPRGR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgcttcactcggtctgatcgacccgcttctccacacgctcgaaagactcgac
tacaaaacgccaacgccggttcaggcccaggccatcccggcggtgcttgccggtcgcgac
ctgatggccgcagcccagaccgggacaggtaaaaccgccggtttcgccttgccgttgctg
catcgtctggtcagcgaaggtccgccggtcaatgccaattccgtgcgtgttctggtgctg
gtgccgacccgtgagctggccgaacaggttcatgccagtttccgcgaatatggcgaaggc
ttgccactgcggacttacgcggtctacggtggggtcagcatcaatccgcagatgatggcg
ttgcgcaagggcgtcgatgtgctggtcgcgacgccgggtcgtctgctcgacctgcatcgc
cagaatgccgtcaaatttacccaggtgcaggccttggtgctggatgaagccgaccgcatg
ctcgatctcggttttgccaatgaattgaacgccgtgtttgccagcttgccgaagcgtcgc
cagaccctgctgttctcggccactttttcggacgaaatccgggcgatggccgccaagctg
ctcgacaagccgctgagtatcgaggttagcccgcgcaatacgacggtcaagagcgtcaaa
cagtgggttgtcccggtcgacaagaaacgcaagagcgaattgttttgccacttgctcaag
aaaaggcgctggggacaggtgctggttttcgtcaagacccgcaagggcgtcgagcaactg
gttgaaaccctgctggcgatgaagatcagtgccgactcgattcacggcgacaagccgcag
gccagccgtcagcgtgcgctggatagcttcaaggctggcgaggtgaagattctcgtcgct
accgatgtggcggcccgaggactggatatcgacgatttgccgcaggtggtcaatttcgat
ctgccgatcatcgccgaagactatattcatcgtatcgggcggaccggtcgggcgggggcg
accggcgaggccatttcactggtctgtgccgatgaggtcaatctgctgtcggccatcgaa
accctgaccaagcagacgctggtgcgtcatgaagagccggggtttgaaccggatcatcgc
gttccgatgaccaacggtgccggtcaggtgctgaaaaaacccaaaaaaccgaaagtgccc
aaatcttccggcaaaggtgtgccgagcaactgggtcggttttgatgatcagccggccggg
cgggggcgtcgtggccaggccaggaatgcagccgcgcctgccgggcgcaaacctgcggcc
aaaccgcgcggacgttga
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