Dechloromonas sp. TW-R-39-2: GBK02_08620
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Entry
GBK02_08620 CDS
T08942
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03030
DNA replication
dech03430
Mismatch repair
dech03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GBK02_08620
03430 Mismatch repair
GBK02_08620
03440 Homologous recombination
GBK02_08620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dech03032
]
GBK02_08620
03400 DNA repair and recombination proteins [BR:
dech03400
]
GBK02_08620
Enzymes [BR:
dech01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GBK02_08620
DNA replication proteins [BR:
dech03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GBK02_08620
DNA repair and recombination proteins [BR:
dech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GBK02_08620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
Rv2179c-like
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QRM19459
LinkDB
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Position
1831257..1833419
Genome browser
AA seq
720 aa
AA seq
DB search
MKAKHRFIAAVVVLGLLMTGPFVVTSLLVWLDMKDAERELLTNLLLSRLPVGTVMTLFGF
VLGVLVLHRLFKQYVEGLLRMAETLRLMLGANRNFRVTPEGPPEVQQLAHAANDLAQQRD
ELMDDVDAQISRAKASVEEEKNRLAALMSELAQAVVVCNLDGRILLYNNRARLQFKALAQ
GPTSVAGGALIGLGRSIFSILEKNQVEHAQEVISQRLHGGKTAMANFITTTRGGQLLRVQ
MVPVLAASASEGEPGMSGYVLTVENITRSMEQEARRDQALHSLTEGSRSALGSIRAAVTN
MIDYPDMETELRERFVRVVDDEAAKMSQRLDLTMAEFSDSMKTRWPLEDILGIDIIAAAQ
RRIEDKLKLPIKTEELDDALWIKADSFSLVFALLSLASKLQDHYEPRELRFRLSSEGKLA
YLDLIWAGPAMSSETFYTWEMESMQVGDETSPLSLRDVIDRHGGEIWYQREKAAHRAFFR
FVLPVAIPEAGLEEDERKRGSGRPEYYDFDLFNFQDKTVDLDRKLSELTYTVFDTETTGL
EPSNGDEIIQIGAARIVNNRLLRQENFDQIIDPERPLRPEGIPIHGITEDMVRGKPTIDG
VLPAFHEFCEDTVLIAHNAAFDMRFLQLKEERTGLRFSQPVLDTLLLSAVVHPNQESHKL
DVILERLGIHIETRHNALEDALATGQVFLKLVPLLEQKGIVTVRQALEASEKTYFARIKY
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctaaacaccgttttatcgctgctgtcgtcgtgctcgggttgttgatgaccggg
ccgtttgtcgtcacttccttgctggtctggctcgacatgaaagatgccgagcgggagtta
ctgaccaacctgctgctttcccgcctgccggttggtaccgtgatgacgctgttcgggttc
gtgctgggcgtgctggtcctgcacaggctgttcaagcagtacgtcgaaggcctgttgcgc
atggctgaaacactgcgtttgatgcttggcgccaatcgcaattttcgcgtcacgccggag
gggccgccggaagtccagcagttggctcacgccgccaatgacctggcgcagcagcgcgac
gagttgatggatgacgttgacgcccagatttcgcgtgccaaagcctcggtcgaggaggag
aaaaaccgcctcgccgccttgatgtccgaactggcacaggccgttgtcgtgtgcaatctc
gatggccgtatcctgctctacaacaaccgggcacgcctgcaattcaaggcgctggcccaa
gggccgacatcggttgctggcggtgcgttgatcggtctcggtcgctcgattttttcgatt
ctcgaaaagaaccaggtcgaacatgcccaggaagtcatcagccagcgcttgcacggcggc
aagacggcgatggccaatttcatcaccacaacgcgcggtggccagttgctgcgcgtccag
atggttcccgtgcttgccgcatcggcaagcgaaggtgaacccggcatgtccggttacgtg
ctgacggttgagaacattacccgcagcatggagcaggaagctaggcgcgatcaggccctg
cattcgctgaccgagggcagtcgttcggcgcttggcagcattcgtgcagcggtgaccaac
atgatcgactatccggacatggaaaccgagttgcgcgaacgctttgtccgggttgtcgac
gatgaggctgccaagatgagtcagcggcttgatctgaccatggccgagttctccgattcg
atgaaaacccgctggccgctcgaagatattctcggtatcgatatcattgccgcagcccag
cggcggatcgaagacaaactcaaattgccgatcaagacggaagagcttgacgatgcgctc
tggatcaaggccgatagtttttcactggtttttgcgctgctttcgctggcttccaagttg
caggatcactacgagccgcgcgaactgcgcttccgtctttcatccgaggggaaactggct
tacctcgacctgatctgggccggcccggccatgtcgtccgaaactttctacacctgggaa
atggagtcgatgcaggtcggtgacgagacttcgccattgtcgctgcgcgacgtgatcgac
cggcatggcggggaaatctggtatcagcgggaaaaggccgcgcatcgggctttcttccgt
ttcgtgctgccggtcgccattcctgaggccgggcttgaagaggatgagcgcaagcgcggt
tccggacggcccgaatattacgatttcgatctgttcaattttcaggacaagacggttgat
ctcgaccgcaagctgagcgagttgacctacaccgttttcgatacggaaacgaccgggctg
gagccgtcgaatggcgatgaaatcatccagatcggtgcggcgcggatcgtcaataatcgc
ctgttgcgccaggaaaacttcgaccagatcatcgatccggagcgtccgctgcgtccggag
ggaattccgattcacggcatcaccgaggacatggtgcgtggcaagccgactattgacggt
gttctgccggccttccacgagttttgcgaagataccgtgctgattgcccacaatgccgct
ttcgacatgcgcttcctgcaactcaaggaagaacgtaccggcctgcgtttctcgcaaccg
gtgctggatacgctgctgctttcggccgtcgtgcatccgaatcaggaatcgcacaagctc
gatgtgattcttgagcgtctcggcattcatatcgagacgcgccacaacgcactcgaagat
gcgctggcaaccgggcaggtcttcctcaaactggtgccgctgctggaacagaaaggtatc
gtgacggttcgccaggcgctcgaagcctccgaaaaaacctactttgcccggatcaaatac
tga
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