Dechloromonas sp. TW-R-39-2: GBK02_09765
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Entry
GBK02_09765 CDS
T08942
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GBK02_09765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dech03400
]
GBK02_09765 (mfd)
Enzymes [BR:
dech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GBK02_09765 (mfd)
DNA repair and recombination proteins [BR:
dech03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GBK02_09765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
HemY_N
AAA_25
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QRM19667
UniProt:
A0A974SWI7
LinkDB
All DBs
Position
complement(2043817..2047254)
Genome browser
AA seq
1145 aa
AA seq
DB search
MPASKSLLSLPALPKPGARIDLPALSGSSDALALAELAARSKGQTLAVVTASAADAQRLL
EEIPWFSSSLKVRLLPDWETLPYDHFSPHQDLVSERLATLWAALQGEVDILLVPASTAVN
RLAPPEFMAAYTFEFSKGQKLDAEKFRSQVTLAGYAHVTQVVSPGEYSIRGGLIDLFPMG
SQLPYRLDLFDDEIESIKTFDVDTQRTVYPVADVRLLPAREFPMDDKGRTHFRQAFREKF
EGDPAKSGVYKDISTGIASAGIEYYLPLFFDDTATIFDYLPKDALFVTHGDAPAAIAAFW
NDTRSRYNLLQGDKSRPLVPPEELFLSDEAFFTAAKSYGRLALDGKNANAGKLPNVAVDR
RSDDPIGALKNHLASFKGRVLLVAETAGRRETLAAMFAEHDLRPATSTDLAAFLASDAKL
ALGIGPLQTGFALDTLAFITETELFAGSPRRTRREAAKKASFDNWLKDLTELKVGDPVVH
ESHGIGRYRGLVRMDLGLGEQEFLELHYANEAKLFVPVAQLHVISRYSGADPESAPLHTL
GSGQWEKAKRKAAEQARDTAAELLALYAARAARQGHAFAFEENDYEAFADGFGFEETHDQ
ATAIAAVIEDMRSGKPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLCPTTLLCEQH
YQTFADRFADWPVKIAEISRFKTAKETAQALHELAEGKIDIIIGTHKLISKDVKFNRLGL
VIIDEEHRFGVRQKETLKSMRAEVDVLTLTATPIPRTLAMSMEGLRDFSVIATAPQKRLA
IKTFVSKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLEKLVPEARIVIGHGQM
NERELERVMRDFTGQRANVLLCTTIIETGIDNPHANTILINRSEKFGLAQLHQLRGRVGR
SHHQAYAYMLVQDEKALTKQAKLRLEAIQAMEELGSGFFLAMHDLEIRGAGEVLGDNQSG
EMQEVGFTMFSEMLNRAVAHLKQGKTIDAVDLTQPLGIGSEINLRTPALLPDGYCPDVHE
RLTLYKRLANCEADDEIDVLQEELIDRFGEMPLQTQSLLATHRLRLLVKPLLIQKLDATS
DQITLQFSPEFSKNPPIEPIKIINLIQKNRSYKLAGQDKISLLRHCPTLTDKVAAVKDMI
RQLTN
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcctccaaatccctgctttccctccccgccctgcccaagcccggcgcccgcatt
gacctgccggccctttccggctcatcggatgccctcgccctggctgaactggctgcccgg
agcaagggccaaacactggcggtcgtcacggccagtgcagccgatgcgcaacgtctgctg
gaggaaattccatggttttcatccagcctgaaagttcgcctgctgcctgactgggaaacg
ctgccctacgatcatttctcgccacaccaggacctcgtttccgagcgcctggcgaccctg
tgggccgccctgcaaggcgaagtcgacatcctgctggttcccgcctctaccgcggtcaac
cgccttgcaccgccggaattcatggcggcctacaccttcgagttcagcaagggccagaaa
ctggacgccgagaaattccgcagccaggtcacgctggctggctatgctcatgtgacgcaa
gttgtttcgcccggtgaatactcgattcgcggcggattgatcgacctcttcccgatgggc
tcgcaactgccttaccggctcgacttgttcgacgatgagatcgaaagcatcaagaccttc
gatgtcgatacgcagcgcacggtttacccggtcgccgacgtacgcctgttgccggcccgt
gaatttccgatggacgacaagggccgcacccatttccgtcaggcgttccgcgaaaaattc
gaaggcgacccggccaaatcgggcgtctacaaagatatttccaccggcattgccagtgcc
ggcatcgagtattacctgccgctgttttttgacgacacggcaacgatcttcgattacctg
ccaaaagatgcgctgttcgtcacccacggcgacgcgccggccgcgattgcggcgttctgg
aacgacacccgctcgcgctacaacctgctgcagggcgacaaatcacggccgctggttccg
cccgaagaattgttcctgagcgacgaagcctttttcaccgccgccaaatcctacggtcga
ctggcgctggacggaaaaaatgccaacgccggaaaactgcccaatgtcgcggtcgaccgc
cgcagcgacgacccgattggcgcgctcaagaaccatctggccagcttcaaggggcgtgtg
ctgctcgtcgccgaaaccgccggacggcgcgaaacgctggccgcgatgttcgccgagcac
gatctcaggccggccaccagcaccgatctggccgctttcctggcaagcgacgccaagctg
gcgctcggcatcgggccactgcaaaccggcttcgcactcgacacgctggccttcatcacc
gaaaccgagctgtttgccggatcgccgcgccgcacccggcgcgaagccgccaagaaggcg
agcttcgacaactggctgaaagatctgaccgagctcaaggtcggcgacccggtcgtccat
gaaagccacggcatcggacgctatcgcggcctggtgcgaatggatctcggtctcggcgag
caggaattcctcgaactgcattacgccaacgaagccaaactcttcgtgccggtcgcccag
cttcacgtgatttcccgctactccggagccgatccggaaagcgccccgctacacacgctg
ggttccggccagtgggaaaaggccaagcgcaaggccgccgaacaggcacgcgataccgcc
gccgaactactcgcgctctacgccgcccgtgctgcgcgtcagggccatgcctttgccttt
gaggaaaacgattacgaagccttcgccgacggtttcggctttgaagaaacgcacgatcag
gccaccgccatcgcagcggtcatcgaggacatgcgctccggcaagccgatggaccgcctg
gtctgcggcgacgtcggtttcggcaagaccgaagttgcattgcgcgccgccttctgcgcc
gtggccggtggcaagcaggtcgccgtactctgcccgaccacgctgctctgcgaacagcat
taccagacctttgccgaccgctttgccgactggccagtcaaaattgctgaaatatcccgg
ttcaagactgccaaggaaacggcgcaagccctgcatgagctggcggagggaaagatcgac
atcatcatcggtactcacaagctgatcagcaaggacgtcaagttcaaccgtctcggcctg
gtgatcatcgacgaggagcaccgtttcggcgtacgccagaaggaaacgctgaaatcgatg
cgtgccgaggtcgatgtcctgaccctgaccgcaacgccgatcccgcgcaccttggcgatg
tcgatggaaggcctgcgcgacttctcggtcattgccaccgcgccgcaaaagcgcctggcg
atcaagaccttcgtcagcaagttctccgacggcatcatccgcgaagccgtgctacgcgaa
ctcaagcgcggcggccaggtttactttctgcacaacgaagtcgacacgatcgacaacatg
cgcgagaagctggaaaagctggtaccggaagcacgcatcgtgatcggccacggccagatg
aacgagcgcgaactggagcgcgtcatgcgcgacttcaccggccagcgcgccaacgtgctg
ctgtgtacgacgattatcgaaaccgggatcgacaatccgcacgccaacaccattctgatc
aaccgttcggaaaaattcggcctcgcccaattgcaccagttgcgcggccgggtcggtcgc
tcgcatcaccaggcttacgcctacatgctggtgcaggatgaaaaagcgctgaccaagcag
gccaagctccgcctcgaagcgattcaggcgatggaagaactcggctcaggtttcttcctc
gcgatgcacgacctcgaaatccgcggcgccggcgaagtgctcggcgacaaccagtcgggc
gaaatgcaggaagtcggtttcacgatgttcagcgaaatgctcaaccgggccgtcgcccat
ctcaagcaaggcaagacgattgacgcggtcgacctgacccagccgctcggtattggtagc
gaaatcaacctgcgtacccccgctctgctgcctgatggctactgcccggacgtccatgaa
cgcctgacgctctacaaacgcctggccaattgcgaggccgacgacgaaatcgacgtcctc
caggaagaactgatcgaccgctttggtgaaatgccgctccagacacagtcgctgctcgcc
acgcaccgcctgcgtttgctggtcaagccgctgctcatccagaagctcgatgcgaccagc
gaccagatcacgctgcagttcagcccggaattctcgaagaatccgcctatcgaaccgatc
aaaatcatcaatttgatccagaaaaaccgcagctataagctggccggacaggataaaatt
tctcttttacgccactgcccgacgctcaccgacaaggtcgccgcagtgaaagacatgatt
cgacagctgacaaactag
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