Dechloromonas sp. TW-R-39-2: GBK02_10040
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Entry
GBK02_10040 CDS
T08942
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBK02_10040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dech03019
]
GBK02_10040
03009 Ribosome biogenesis [BR:
dech03009
]
GBK02_10040
Enzymes [BR:
dech01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GBK02_10040
Messenger RNA biogenesis [BR:
dech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GBK02_10040
Ribosome biogenesis [BR:
dech03009
]
Prokaryotic type
rRNA processing factors
GBK02_10040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRM19718
UniProt:
A0A974Y7Z8
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All DBs
Position
complement(2100759..2103455)
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AA seq
898 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY
GADRHGFLPFKEISRSYFQPGVDVGRAKINEALKEGQELIVQVDKDERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRVDGDERAELRETMDQLAVPQGMSLIARTAAIGRQAEELQ
WDLNYLLQLWTAIEGAAKQQNGAFLIYLEGSLVIRAIRDYFHSEIGEILIDTDDVYEQAR
AFMGTVMPGNVNRVKRYRDDVPLFSRFQIEHQIETAFVRQVNLPSGGAIVIDHTEALVAV
DVNSGRATKGADIEETAFKTNLEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENR
LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYISCPRCTGTGHIRSTESAALH
ILRILEEEAMKENTAAVNVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNINLETPA
HTIVRLRHDDLNNDDARAPSYRMVDAPVEEVTKLGSSKDDTAKPRQEAVIKGIAPEQPAP
NLPEKTQEQAAPVNKSEPGLLARIASWFRSEPKAEEPAPAPQPAQKKGRDGRSEGRRERG
EGRDGRRGGRNNRRDEERGERQERGNRNERNSAEKSPREDSAPTANTEPRQERRPRGERK
ERKERVQVESAEISKLNADVAALEVSAPVATAAPESSGGEEQGSRRRGRRGGRGRGERRN
EAEGTQSQPEALDATSPEFAPAINQEPVVVIIPAAEPAPQPVEAAPAVVIAVEPAVEAAP
APVFEPVVEIAPVIQAAAPVEITAPVEAVAPVEVPAQVATVDVPVEPEITPAAPVSTPAP
QPVDLEKTLNDSGLVMVQTTSAAVVAQPEAPVKLGRPRKPKAVVEQAEEALVMVETGK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacacaggctgaagaactccgtgtcgccattgtcgat
ggtcagaaactgattgatctcgacattgagtcagccgccaaagagcaacgcaagagcaat
atctacaaaggggtcatcacccgtatcgagccatctctcgaagcctgcttcgtggactat
ggtgcagaccggcatggtttccttcctttcaaggaaatttcccgctcttatttccagccc
ggcgtcgacgtaggtcgcgccaagatcaacgaggccctgaaagaaggccaggaattgatc
gttcaggtcgacaaggacgaacgtggcaacaagggcgccgccctgaccacctatgtttcc
ctggctggccgctatctggtcctgatgccgaacaatccgcgtggtggcggtgtttcccgc
cgcgtagacggtgacgagcgcgctgaactgcgtgaaaccatggatcagctcgccgtaccg
caaggcatgagcctgatcgcccgcaccgcagccattggccgccaggctgaagaactgcag
tgggacttgaactacctgctgcagctgtggaccgccatcgaaggcgccgccaaacagcaa
aatggcgcctttctgatctacctcgaaggtagcctggtcatccgcgccattcgcgactat
ttccattccgaaatcggcgaaatcctgatcgataccgacgatgtttacgagcaggctcgt
gccttcatgggtaccgtcatgccgggcaacgtcaatcgcgtcaaacgctatcgcgacgat
gtccctctcttttcgcgtttccagatcgaacatcagatcgaaaccgccttcgtgcgccag
gtcaacctgccgtccggcggcgccatcgtcattgaccataccgaagcactggtcgctgtc
gacgtgaactccggtcgtgccaccaagggcgccgacattgaagaaaccgccttcaagacc
aatctggaagccgctgaagaactggcccgccagcttcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaaaaccagaagaaccagcgtgaagtcgaaaatcgc
ctacgcgatgcgctgcgtttcgaccgcgcccgcgtccagatgggcaaaatcagccgcttt
ggcctgatggagctgtcacgccagcgtctgcgtccggccctggctgaaaccagctacatt
tcctgcccgcgctgtaccggcaccggtcacatccgttctaccgaatctgccgcactgcac
atcctgcgcatcctcgaagaggaagccatgaaggaaaacacggcagcagtcaatgttcag
gttccggtcgatgttgccaccttcctgctcaacgaaaagcgcccggatatccaggccatc
gaattgcgccacaaggtaacgatcctgctgattccgaacatcaatctggaaacaccggca
cataccattgtccgtctgcgccatgatgacctgaacaatgatgatgcgcgcgcaccgtcc
taccggatggttgatgcacctgtcgaagaagtcaccaaacttggcagcagcaaggacgat
accgccaagccgcgccaggaagcagtcatcaagggcatcgcaccggaacagccggcaccg
aacctcccggaaaagacacaggaacaagctgctccggtcaacaagtcggagccgggtctt
ttggcccgcattgcatcctggttccgtagcgaacccaaagccgaagagcctgcaccggca
ccgcaacccgcccagaaaaaggggcgtgacggacgcagcgaaggtcgtcgcgaaagaggc
gaaggtcgtgacggccgccgcggcggtcgcaacaaccgtcgtgacgaagaacgtggcgaa
cgtcaggaacgtggcaatcgcaacgagcgcaattcggccgagaaatcaccgcgtgaagat
agcgcaccgaccgccaataccgaaccgcgccaggagcgtcgtccgcgtggcgagcgcaag
gaacgcaaggagcgtgtacaagtcgagtcagccgaaatcagcaagctgaacgccgacgtt
gctgcactcgaggtttccgcacccgttgcaactgccgctccggagtcatccggcggtgaa
gagcaaggcagccgccgtcgcggtcgccgtggtggccgcggacgtggcgaacgccgcaac
gaagccgaaggtacccagtctcagccggaagctctggatgcaacctcccctgaatttgcc
cccgcaatcaatcaggaaccggttgttgtcatcattcctgcagcagaaccagcaccgcaa
cccgtagaggcagcccctgccgtcgttatcgccgtcgaaccggcagttgaagccgctccg
gcgccggtattcgaaccggtagttgaaatcgctccggtgatccaagctgctgctccggtt
gagatcacagcaccggtcgaagctgtagctccagttgaagtaccggcgcaggttgctacg
gtcgacgtgcctgtcgagcctgaaatcacgccagccgcacctgtttcgacgccggcaccg
cagcctgttgatcttgagaagacgttgaatgacagtggtctggtcatggttcaaacaaca
tcggccgccgtcgttgcccaaccggaagctccagtcaagctgggacgcccgcgcaagccg
aaggctgttgttgagcaggctgaagaagcactggtcatggttgaaaccggcaagtaa
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