Dehalobacter sp. DCA: DHBDCA_p2048
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Entry
DHBDCA_p2048 CDS
T02278
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ded
Dehalobacter sp. DCA
Pathway
ded03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ded00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DHBDCA_p2048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ded03019
]
DHBDCA_p2048
Messenger RNA biogenesis [BR:
ded03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DHBDCA_p2048
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFV03075
LinkDB
All DBs
Position
complement(2085953..2087617)
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AA seq
554 aa
AA seq
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MPKEHKLQIIPLGGLGEIGKNMTLVKYDNQMIMIDAGMAFPEDDMPGIDLVIPDYSYVIE
NKDMLLGIMVTHGHEDHIGTFPYLLKDIDAPVFAPKLTLGLIQAKLKECNVNRFKSTVVN
PGESIKLGVFKIDFIRVNHSIPDSVSLAIHTPLGVIVHTGDFKLDHTPVTSEILDIYKFS
ELGEKGVLCLMSDSTNVERPGFTMSERVVGQMFDDVFRTAKERIILASFASNIHRVQQVI
TAAFKTNRKVAIVGRSMQNYASIAAEYGYLIIPEGTLVDVEEVLQLPPNQVCIITTGSQG
EPMSALSRMASSDHKQVEILPGDTVIISASPIPGNEKSVARTIDQLFKLGANVIHEQASG
VHVSGHGSQEELKMMLNMVRPQYFVPVHGEYRMLIKHGQIAEQLGIPHKNIFIAENGSVI
EFTRNGAGIAGKVPSGRILVDGLGVGDVGNIVLRDRKQLSQDGILIVVIALSRSTNEIVA
GPDIVTRGFVYVRESETMLDEAKEKIRQTTERCLENGIIEWVTLKNQIKDVLGKHLYEKT
KRKPVILPIIQEVK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaagaacacaaactgcaaattatccctttaggcgggttgggtgagatcggaaaa
aacatgacgctggtaaagtatgacaaccagatgatcatgattgatgccggtatggctttt
cctgaagatgacatgcccggaattgatctggtcatccctgactattcctatgtcatcgaa
aacaaggacatgctgctcgggattatggtgacccatggtcatgaagatcatatcggcaca
ttcccatatcttctgaaggacatagacgcgcctgtatttgcgccgaaacttaccttggga
ctgatccaggccaaattaaaggagtgcaatgtcaaccggtttaaatcgactgtcgtcaat
cctggagagagtatcaagcttggcgtttttaaaattgattttatccgggtcaaccacagc
atacctgattctgtgagtctggctatccatacacccctcggtgtgatcgtccataccgga
gattttaaactggatcatacccccgttacctcggagatcctagatatttataaattctcc
gaattgggtgaaaaaggtgtactctgcttaatgtctgacagcacgaatgtagaaagacct
ggctttacgatgtcggagagagtggtcggacagatgtttgacgatgtattccgcaccgcc
aaggaaaggatcattttagccagctttgcttcgaatatccatcgcgtgcagcaggtcatc
accgctgctttcaaaacgaacaggaaggttgccattgtcggcaggagcatgcagaattac
gcctcaatcgctgctgaatacggatatctgatcattccagaaggaacgctggtcgatgta
gaagaggttctccagctgccgccgaatcaggtctgcattattacaacagggagccaggga
gaaccgatgtcggcactttctcgtatggcctctagcgatcataaacaggtcgaaatcctg
cccggtgatacggtgattatttcggcgagtccgattccgggaaatgaaaaatcggtggcc
cggaccatcgatcagttgtttaaactcggcgccaatgtgatccacgaacaagcatcaggc
gtccatgtttccggtcatggcagtcaggaagaattaaagatgatgctgaatatggtaaga
ccgcagtattttgtgcctgtgcacggtgagtaccgcatgctgatcaagcatggtcagatt
gccgaacagcttggcattccgcacaaaaatatttttattgccgaaaatggaagtgtcatt
gagttcaccagaaatggagcaggtatcgctggaaaagtgccatccggcagaattttagtg
gacggacttggcgtaggggacgtcggcaatattgtgctgcgcgaccgcaaacagctgtct
caggacggtattctaatcgtagtcattgcgctgagccgttccaccaatgaaattgttgcc
gggcctgatattgtgaccaggggattcgtctatgtcagagaatccgagacgatgctggat
gaggccaaagagaaaatcagacagaccaccgaacgctgcctcgagaacggtattattgaa
tgggtcacactcaaaaatcagattaaagacgttctaggcaagcatctgtacgaaaaaacg
aaaagaaaaccggtcatcctgccaattattcaggaagtgaaataa
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