Dehalobacter sp. DCA: DHBDCA_p2529
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Entry
DHBDCA_p2529 CDS
T02278
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ded
Dehalobacter sp. DCA
Pathway
ded02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ded00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DHBDCA_p2529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ded03021
]
DHBDCA_p2529
Transcription machinery [BR:
ded03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DHBDCA_p2529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
FokI_D3
PhyR_sigma-like
TelA
Motif
Other DBs
NCBI-ProteinID:
AFV03556
LinkDB
All DBs
Position
complement(2568501..2569661)
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AA seq
386 aa
AA seq
DB search
MARNNKKQFVANYPLEGENSVTVDEMKKENVSTLIELGKTKGNLTYDEIANALQKVDLSE
DQIEEIYDQLSGLGIDVVDDSVEVVIDKETKDLADEIANETDIDLSIPEGVGIDDPVRMY
LKEIGRVPLLTAEDEIELALKMEAGDEMAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQ
EGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRV
NRQLLQELGRDPTPDETAKVMEIPEERVREILKIAQEPVSLETPIGEEEDSHLGDFIPDE
DAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRER
IRQIEAKALRKLRHPSRSKKLKDYLD
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
gtggcgagaaataataagaaacaatttgttgcgaattatccgctggaaggggagaattcc
gtgaccgtagatgaaatgaaaaaggaaaatgtctcgactttaattgagctgggcaaaacc
aagggtaatcttacctatgatgagattgccaatgctttgcagaaggtcgacctttctgag
gaccagattgaggagatctatgaccagctgagcgggctcggcattgatgttgttgacgac
agcgtcgaagtggttatcgacaaagaaacaaaagatcttgccgacgagatcgctaatgaa
acagacattgacctttccattcctgaaggtgtggggatcgacgatcccgtcaggatgtac
ctgaaggagatcggccgggttcctttgctgacagcggaagatgagattgaactggctctc
aagatggaggccggggatgaaatggccaagcgccgtctggcggaagcaaacctgcgtctg
gtggtcagtattgccaagcgctatgtgggccgcggcatgcttttcctggacctgatccaa
gagggcaatcttggtctgattaaagctgtggaaaaatttgattaccgcaaaggctttaaa
ttcagtacgtatgcaacctggtggatcagacaggccatcacgcgcgcgatcgccgaccag
gccagaacgatccgcataccggttcatatggtcgaaacgattaataaactgatccgggtc
aacagacagctcctgcaggaactgggccgcgatccaaccccggatgaaacagccaaggtc
atggagataccggaagaacgtgttcgggagatcttgaagatcgctcaggaacctgtttct
ttggaaacaccgatcggggaagaggaagattcccacctcggagattttattcccgacgag
gatgctccggctccctctgaagccgcgtcattcatcctgctcaaggaacagcttgaagag
gtccttgagacgctcaccccgagagaagagaaagtcctcagactgcgtttcggactcgac
gacggacgcaccaggaccttggaggaagtcggccaggaattcggcgtaaccagagaaaga
atcaggcagatcgaggccaaggcgctgcgcaagctccgccatccaagccgcagcaaaaaa
ttgaaggattatttagactaa
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