Dehalobacter sp. DCA: DHBDCA_p2744
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Entry
DHBDCA_p2744 CDS
T02278
Symbol
cshA
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ded
Dehalobacter sp. DCA
Pathway
ded03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ded00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DHBDCA_p2744 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ded03019
]
DHBDCA_p2744 (cshA)
03009 Ribosome biogenesis [BR:
ded03009
]
DHBDCA_p2744 (cshA)
Enzymes [BR:
ded01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DHBDCA_p2744 (cshA)
Messenger RNA biogenesis [BR:
ded03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DHBDCA_p2744 (cshA)
Ribosome biogenesis [BR:
ded03009
]
Prokaryotic type
rRNA helicases
DHBDCA_p2744 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
DUF7528
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFV03771
LinkDB
All DBs
Position
2808563..2809978
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AA seq
471 aa
AA seq
DB search
MSNFFEIGLSSVLTQAISEMGFEETTPIQERTIPLVLEGKDIIGQAQTGTGKTAAFGIPM
IERMKPDRESIKALVVTPTRELAIQVAEELNRIGQFKGVRSLPIYGGQDIDRQIRSLRNR
PQIIVGTPGRLMDHMRRRTIRLQQVETVVLDEADEMLSMGFVEDIENILKEVPEQRQTLL
FSATMPKSILDLAQRFMQNPEYISMKTKEIIVPQIEQCYVEVQEKQKFDVLCRLLDIQSP
DLAIVFGRTKRRVDELFEALSKRGYSAEGIHGDLTQARRDMVMRHFKEGLTEILVATDVA
ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKGGQAITFVTPREIGHLRLIEQVAK
RRITRKPLPTFNDVLVGQQRLTMDKILKAAEDEDILRYKEMAEELLEDNDSITLLSAALK
LLTKEPSTAPIVLTEEAPLRSRQPRRFDQQQGFHRNRDNSKYPSRFPKRKF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatttctttgaaataggccttagtagtgtactgacccaagctatttctgaaatg
ggctttgaagagaccacaccgattcaggagagaacgattccgcttgtgctggaaggcaag
gatattatcgggcaggctcagaccggaactggcaagacagccgctttcggaattccgatg
attgagcgtatgaaacctgacagagaaagtatcaaagcccttgtggtcacaccaacccgg
gaactggctatccaggtagctgaagaactgaaccgtattggtcagtttaaaggtgtccgg
tccctgccaatttacggcggacaggatattgaccggcagatccggtctctgcggaaccgg
ccgcagattattgtggggactcccggacggctgatggaccatatgagaagaagaaccatc
cgtcttcaacaggttgaaacggtcgtgcttgatgaagcagacgaaatgctcagtatgggt
ttcgtggaagatattgaaaatattctgaaggaagttcctgaacaaaggcagacactgctt
ttctctgcaacgatgccaaaatcgattctggatctggcccagcgctttatgcagaatccg
gaatatatcagcatgaaaaccaaagagatcatagttcctcaaatcgaacagtgttacgtg
gaagtccaggaaaaacaaaagtttgatgtactctgccgcctgctggatattcagtctccc
gatctggccattgtctttggacggacaaagcggcgggtcgatgagctgtttgaggcttta
agcaaaagaggttattccgccgagggaatccacggcgacctgacccaggccaggcgcgat
atggttatgcgtcattttaaagaaggtttaacggagattctggttgctacggacgttgcg
gccagaggtctcgatattagcggcgtgacgcacgtctacaattttgacgttccccaggat
ccagaaagttatgtccacagaatcggacgtaccggccgagccggcaaaggcggacaggca
attacatttgttactccaagagagatcggccatttaagactgattgagcaggtcgccaaa
agaagaattacgcgcaagcccttgccaacctttaatgacgtactggtcggtcagcagcgc
ctgaccatggataaaattcttaaagcggccgaggacgaagatattttacgctacaaggaa
atggcggaagaattgttggaggacaacgattccatcactttgttatccgctgcactgaaa
ctactgacgaaggagccaagtactgctccgatcgtgctgactgaggaagcgcctttgcgt
agtaggcagccccgcaggtttgatcagcagcaaggattccaccgaaaccgcgataacagc
aaatatccttcaaggtttccgaaacggaaattctaa
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