Dehalobacter sp. DCA: DHBDCA_p841
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Entry
DHBDCA_p841 CDS
T02278
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ded
Dehalobacter sp. DCA
Pathway
ded03410
Base excision repair
ded03430
Mismatch repair
ded03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ded00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DHBDCA_p841
03430 Mismatch repair
DHBDCA_p841
03440 Homologous recombination
DHBDCA_p841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ded03400
]
DHBDCA_p841
DNA repair and recombination proteins [BR:
ded03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DHBDCA_p841
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DHBDCA_p841
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DHBDCA_p841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
AFV01870
LinkDB
All DBs
Position
complement(881392..883449)
Genome browser
AA seq
685 aa
AA seq
DB search
MENNLWVLSQKTYSGEAFLEKAGLSRSTLSILHNRGYSSRDSVLEFLKPSLLDLHSPFLF
KDMEVILQRLAKARTDQEKILIYGDYDADGVTGTALLYKGLISLGYQVVVHIPSREEGYG
LHSEAIEKASQNNVSLIITVDCGISAVQEITFAKTCGIDIIVTDHHEPPDELPCAVGILN
PKIADSGYPFPHLAGVGVAFKLLQALYARLGYSEAAFGSENDYLDLVALGTIADIVPLVG
ENRILVKNGLTVMENTRHSGIRAMLEECGLLGKKLKAGQISFIVAPRINAAGRMDTARLA
LNLLLEETYGDALEMARELSKENNLRQLTEKELLCDAERILAEGPIPNVIVLSSPNWHHG
VIGIVASRLVERYKRPVFLIAEEGDTGKGSARGISDYHVLDELKKQADALSKFGGHKQAA
GFTVPVDQIPQLREGLNNSFLELGIIFKERFQIDSIISWDELNVQLLEELEQMAPFGAGN
PAPVLRTDGLAVQNVSIVGKGREHLKMTLAAAKLKREAMAFKKGQEFDLVKNIDMIDIIY
NLELNSYGNVETIQAVVKDFRPSGVGAKQEIACTAEGYSEPELAISGSLPDFETAAFEEK
ILAPRLSRKMLADFYRNLKSVMDERGFIRWERSAEKPEMQLNIMKIFEELGIISWYGGTG
PYLFKLNNIEKTYLQTSLRFRVWSE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaacttgtgggttttgtcacaaaaaacgtattcgggtgaagcatttttagaa
aaggcgggactctcccgcagtaccttgagtattcttcataaccggggttattcttcgaga
gacagtgttttggaatttctgaagccgtcgctgctggacttgcactctccgttcttgttt
aaagatatggaggtcatcttgcaaaggcttgccaaggctaggacagatcaggaaaagatt
ttgatctacggggattacgatgccgatggtgtaactggaacagccttactgtataagggc
ctgatcagtcttgggtatcaggtcgttgtccatatcccgagccgggaagaaggctatggc
ctgcattcggaagcaatcgaaaaagcaagccaaaacaatgtctcgctgattatcactgtt
gactgcggaatctcagctgtccaggaaataacctttgctaaaacttgcggcatcgacatc
attgtcacggaccaccatgaaccgccggacgaactgccttgcgcagttggaatattaaat
cccaaaatagcagattcaggttatccgtttccgcatttggccggtgtcggggtagccttt
aaactcctgcaggccttatacgcccgtttaggttattctgaggcggcatttggctcggag
aacgattatcttgatttggtcgcactcggaacgattgcggatattgtcccactcgtcggg
gaaaacagaatccttgtcaaaaacgggctgaccgtgatggaaaatactaggcactccggg
atcagggcgatgctggaggaatgcggccttctcggcaagaagcttaaggcaggtcagatc
tcgtttattgtcgctccgagaatcaatgccgccgggaggatggatacggcgaggctggca
ctgaacttactgcttgaagagacctatggtgatgcgttggagatggccagggaacttagc
aaggaaaacaatctgagacagcttaccgaaaaggagctcctttgtgatgctgaacgcata
ctggctgaaggcccaatacccaatgtcattgtcttgtcctcaccgaactggcatcacgga
gtgattggcattgtcgcttcgcgactcgtggagcgctacaagcggccggtcttcctaatt
gccgaggaaggagatacggggaaaggctcagccagaggaatctcggactatcatgttctc
gacgaattaaaaaaacaagcggacgctttaagcaaatttggcggtcataagcaggcggcc
ggatttacggttcctgttgaccagatcccgcagctccgggaagggcttaacaacagtttt
cttgaacttgggatcatctttaaggaacgttttcagatcgattctattatatcgtgggat
gaattgaatgttcagttattggaagagctggaacagatggctccgtttggggcaggaaat
ccagcacctgtcttaagaacggacggccttgccgtccaaaacgtttctattgtcggtaaa
ggccgggaacatttaaaaatgacgctcgcagccgcaaagcttaaacgggaagctatggcg
tttaaaaagggacaagaatttgatctggtcaaaaacatcgatatgatcgatatcatttat
aatcttgagctgaacagctacggtaatgtcgaaactatccaggccgtcgtcaaggatttc
cgtccttccggtgtcggagccaagcaggaaatcgcctgtacggctgagggatattccgaa
ccggagctggccattagcgggagcctgccggatttcgagactgccgccttcgaagaaaag
attctggcaccgcgtctttccagaaagatgctggcggatttctatcgaaaccttaagagc
gtaatggatgaacgcggttttattcgatgggaacggtctgcggaaaaacctgaaatgcag
ctcaacatcatgaaaatatttgaggaacttggcatcatcagctggtatggcggaacaggc
ccgtatttatttaaattaaacaatatcgagaaaacctacttgcagacttctttgcgtttc
agagtctggagcgaatag
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