Deefgea piscis: HQN60_00895
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Entry
HQN60_00895 CDS
T06622
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dee
Deefgea piscis
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dee03019
]
HQN60_00895 (hrpA)
Enzymes [BR:
dee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HQN60_00895 (hrpA)
Messenger RNA biogenesis [BR:
dee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HQN60_00895 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_23
AAA_19
nSTAND3
T2SSE
AAA_25
NACHT
FtsK_SpoIIIE
NTPase_1
ResIII
SLFN-g3_helicase
ABC_tran
Phage_TAC_17
SRP54
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
QKJ65407
UniProt:
A0A6M8SU64
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All DBs
Position
169020..172967
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AA seq
1315 aa
AA seq
DB search
MNLDFRALRAHIADCLSNDYPTLSRQLQQCSDRQKKQQDFAPQLAELQAGIERSLAKAQL
RRERLPKPEYDDSLPVNQRRDEIKAAIAKHQVVIICGETGSGKTTQLPKICLELGRGVRG
LIGHTQPRRLAARSVASRIAQELNSETGSIVGYKVRFTDKSSPSSYIKLMTDGILLAETL
SDRYLNQYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIVTSATIDSDRFSQHFNN
APVLEVSGRTFPVEVRYKALASKDEDDQEIEMEEAIAQAVDELWRKDGSGDVLVFLPGER
EIRETAEELRKAKLRDAEILPLFARLSNEDQQRIFRPSSTGRRIVLATNVAETSLTVPGI
RYVIDSGQARINRYSPRAKVEQLLIEKISQASARQRAGRCGRVASGICVRLYSEQDFLLR
SEFTDPEITRSSLAGVILRMAALKLGNVDQFPFLEAPSSKLISDGYQQLRELGAVTESDT
LTDIGRQLSRLPVDPRVGRMLLAGRDEGCLKEMLIITSGLSLQDPRERPYDARAAADQAH
AKFNEEKSDFLSYLRLWDFFEKLLADKTTNRQLVQDCHRSFLSYLRLREWRELHKQLSDM
VISDEVSDSRSRHAPFRLNEKPATFEQIHKALITGLLGNLGFKQPENDEYLGARGLKFNV
FPGSSLKKARPKWIVAAELVETSKLYARCVAVIEPEWVEKLAPHLIKKQYFDPHWSKDSA
QVNASLRITLYGLPIVARRQVHYGSINPTEAREMFIREALVRFNYNSKAKFFEHNFAMLL
DVEELEHKARRQDVLVDENALFAFFDSRIPQDIVNGAGFEAWRKGAEKLNPQLLYLQKDD
LMQHSAAAVTEEQYPEFFRLHDVKLPLGYRFEPGHILDGVTITLPLHLLNRVNHATFDWL
VPGLIREKITLLIKSLPKSIRRLCVPVPEFATKMLTALETASREEPLLPQLAQCITRGVG
QPVSADELNPNDLPLHLRMNFRVIDDAGQELAQGRDLIAIRAQLGEAAQLTFRDTADETT
GIEKSGITKWDFGDLPNKLSFQRHGKAMTGYPGLVPDEEVAADGSRKDCVAIRLFDTEHA
ANEAHRAGVIRLLQFELKDHLKQLPKSLPNFNQLAIHFRSLGNSDELMADVIACICNRAF
LGDDEAPRTMKAFNEQKSRARVRLPSVRDGVLRILNEIAPDFVALSGLLAKGGNIQNELK
TQLATLIYPRFLSATPWEQMPRLPLYIKAMKIRLEKRAQNPSRDGQRGAEVNELMARYIA
EIGKWQKEGRDTAKLLPFRWMIEELRIGLFAQELKTPYPVSLKRLNKVWDELTKR
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggattttcgcgccctacgcgcacacatcgctgactgtctatccaatgactac
cccacgctttctcgccaactccagcaatgcagtgatcggcagaaaaagcagcaagatttc
gcgccgcaacttgcagagctgcaagccggaatcgagagatcactcgccaaagcccagctg
cgccgagaacgcctgcccaagcctgaatacgacgacagcctgcccgttaatcagcggcga
gacgagattaaagcggcgattgccaagcatcaagtcgtgattatttgcggcgaaaccggc
tcgggtaaaaccacgcaattgccgaaaatctgccttgagctgggccgtggtgtccgtggg
ctgattgggcacactcaaccacgtcgcttggcggcacgctcggtggccagccgtatcgca
caagagctcaatagcgaaaccggcagcatcgtcggctataaagtccgatttaccgataaa
agctcaccgtcgtcgtacatcaaattgatgaccgacgggattttgctcgccgaaacgcta
tctgatcgctacctcaatcaatacgacaccatcatcatcgacgaggcgcacgagcgcagc
ttaaatattgattttttgctcggctacctcaagcaattactcccgcgccgccccgacctc
aaagtcatcgttacctcagcgaccattgattcggatcgctttagccagcattttaacaat
gcaccggtactcgaagtctctggccgcaccttcccggttgaagtgcgctacaaagcactc
gccagcaaagacgaagacgaccaagaaatcgaaatggaagaagccatcgcccaagcggtg
gatgagttgtggcgcaaagacggtagcggcgatgtgctggtatttttgcccggcgagcgc
gaaatccgcgaaaccgccgaagaactacgcaaagccaaattgcgtgacgctgaaattttg
ccactgtttgcccgattatccaatgaagaccagcagcggatctttcgcccgagcagcact
ggccgacgtatcgtgctggcaaccaatgtggccgagacgtccttaacggtacccggcatc
cgatacgtcatcgacagcggccaagcgcgaattaaccgctacagcccgcgcgccaaagtc
gaacagttactaatcgaaaaaatctcgcaagcctcagctcgccagcgcgcaggtcgctgc
gggcgcgtcgctagcggcatttgcgtgcgcttgtattcagagcaagactttttgctgcgt
tcagaatttaccgatccagaaatcacccgctccagtttagccggcgttattttgcgcatg
gccgcacttaaactcggcaatgtcgatcagtttccattcttagaagcgccgtcaagcaaa
cttatttctgatgggtatcaacagctacgcgaattaggtgctgtgaccgagagcgatacc
ctcactgatatcggccgacaattatcccgcctgccggtagacccacgcgttggccgcatg
ctactggctgggcgtgatgagggctgcctgaaagaaatgctgattattacctcaggtcta
tcgctgcaagatccacgcgagcgcccgtatgatgcgcgcgctgcagccgatcaagcgcac
gccaagtttaatgaagaaaaatccgactttttatcctatttgcgtttgtgggatttcttt
gaaaaactgctggccgacaaaaccaccaaccgccagctagtccaagattgtcaccggtcg
ttcttgtcctacttgcgcttacgcgaatggcgcgagctacacaaacaattgtccgatatg
gtgattagcgacgaggtcagcgattcgcgcagccgccatgcaccgttccgcctgaacgaa
aagcccgcgacatttgagcaaattcataaagccttgattaccggcttgctcggcaattta
ggctttaaacaaccggaaaacgacgaataccttggcgctcgcggccttaaatttaatgtg
tttcccggctctagcctaaaaaaagctcggcctaaatggattgtcgccgctgaactggtt
gaaaccagcaagctgtacgcacgctgcgttgcggtgattgaaccggaatgggtggaaaaa
ctcgcgccgcatctcatcaaaaaacaatattttgacccgcactggagcaaagacagcgcg
caagtgaatgcatcgctaaggattacgctgtatggcttaccgattgtcgcccgccggcaa
gtacactacggcagtatcaatcccactgaggcgcgcgagatgtttattcgcgaagcctta
gtgcgctttaattacaactccaaagccaagttttttgagcataactttgccatgctgctc
gacgttgaagagctcgagcacaaagcgcgtcgccaagacgtcttggtcgatgaaaatgcc
ttatttgctttttttgattcgcgcattccgcaagacattgttaatggcgccggctttgaa
gcttggcgtaaaggtgcagaaaaactcaatccgcaactgctgtatctgcaaaaagacgat
ttaatgcagcacagcgcggcagcggtgactgaggagcaataccctgagtttttccgcctg
catgatgtcaaactaccactggggtatcgctttgaacccggccatatccttgatggtgtg
accattaccctacccttgcatttacttaaccgcgtcaatcacgctacgtttgattggctg
gtaccagggctgattcgcgaaaaaatcaccttattgattaagtcgctccccaaatcgatc
cgccgcctgtgcgtaccggtgccggaatttgctaccaaaatgctcacggcactggaaaca
gccagccgtgaagaaccgttattaccgcaactggcgcaatgcattactcgtggcgtaggc
caacccgttagcgctgacgagctcaaccccaatgatttgccactgcatttgcggatgaac
ttccgggtgatcgatgatgctgggcaagaactcgcccaaggccgtgacttaatcgcgatt
cgcgcccaattgggcgaagccgcccaactcaccttccgcgatacggccgatgaaaccacc
ggcattgaaaaatcaggcattaccaaatgggattttggtgacctaccgaataaactgagc
tttcagcgccacggcaaagccatgaccggctatcccggactcgtgcccgatgaagaagtc
gccgctgatggtagccgcaaagactgcgtcgccatccgcttatttgataccgaacatgcc
gccaatgaagcacatcgcgctggcgtgattcgactattgcaatttgagctgaaagatcac
ctcaaacaactaccaaaaagcctacccaattttaatcaactggcgattcattttcgcagc
ctaggcaatagcgatgagctgatggccgacgtgattgcctgcatttgcaaccgcgctttt
ctcggtgacgatgaagcgccacgcacaatgaaagcgtttaacgagcaaaaaagccgcgct
cgcgtgcgcctaccctcggtgcgagatggcgtgttgcggattttaaatgagattgcccct
gactttgtcgccctcagcggcttgttagccaaaggtggcaatattcaaaatgaacttaaa
acccaattggccacgctgatttatccgagatttttaagcgcaacgccgtgggagcaaatg
ccgcgtttaccgctgtatatcaaagcgatgaaaatacgcttagaaaaacgcgcgcaaaac
ccatcgcgagatggtcaacgtggtgccgaggtcaatgagctaatggcaaggtatatcgct
gaaatcggcaagtggcaaaaagaaggtcgtgataccgccaaattactgccgtttagatgg
atgattgaagaattgcgcattggcctgtttgcgcaagaattaaaaacgccgtatccggta
tcgctcaagcgcttaaacaaagtctgggatgagctcaccaaacgctaa
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