Deefgea piscis: HQN60_01985
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Entry
HQN60_01985 CDS
T06622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dee
Deefgea piscis
Pathway
dee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN60_01985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dee03019
]
HQN60_01985
Enzymes [BR:
dee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HQN60_01985
Messenger RNA biogenesis [BR:
dee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HQN60_01985
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QKJ65607
UniProt:
A0A6M8SUR4
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All DBs
Position
complement(400674..402035)
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AA seq
453 aa
AA seq
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MSITFASLGLAPEVLKAVVAQGYETPTAIQAEAIPVILAGKDVLGAAQTGTGKTAAFTLP
ILTRIIRHANHSASPARHPIRALILTPTRELADQVYANVATYSKGTGLRSHVVYGGVDVK
AQQPALREGIEVLVATPGRLLDHIQQKSINLSQVEILVLDEADRMLDMGFILDIQNIFNL
CTNRKQTLLFSATFAPEIIKLSKQFMHEPVKIEISRQNSANESVKQELHPVETGRKRALL
AHLIRVHQMTQVIVFCRTKIGADQVARDLKRAGFNCEAIHGDRDQRARTEALTKFKAGET
QVLVATDVAARGLDISDLPYVVNYELPTNAEDYVHRIGRTGRAGATGVAISLVAPEEGKA
YEGIKKLLNREMPLIPVHGFSPGTIQVIDERPARAERRHHVDPTTDKGVKEYQRMPSRAQ
RDASEVPAFPSNLPKLPKRAPQVAALFLPKKHG
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcacatttgcatcattaggcttggcgcctgaagtattaaaggcggtcgttgca
caaggctatgaaactcccactgcgattcaagctgaagcgatcccggttattttggccggt
aaagacgtgttaggtgccgcgcaaaccggtaccggtaaaacggccgcgtttactttgccc
attttgacgcgaattatccgtcacgccaatcacagtgcttctccggcacggcacccgatc
cgcgctttgattctcacgccaacgcgtgagttggccgatcaggtctacgccaatgtggcc
acttacagcaagggcacgggtttgcgtagccatgtggtgtatggcggtgtggatgtgaag
gcgcaacaaccggcgctgcgtgaagggatcgaagtcttggtcgccacgcccggtcgtttg
ctcgatcatatccagcaaaaatcaattaatttatcgcaagttgaaattttggtcctagac
gaagccgatcgcatgctcgatatgggtttcattttggatattcaaaatattttcaatttg
tgtaccaatcgcaagcaaacgctgttgttctcggcgacttttgcgccagaaattatcaag
ctgtctaagcaatttatgcatgagccagtgaaaattgaaatttcacgccaaaactcagcc
aatgaatcggtcaaacaagaattgcatccggttgaaactggccgcaaacgtgctttgttg
gcgcatttgattcgtgtgcatcaaatgacgcaagtgattgtgttttgccgtaccaaaatc
ggtgccgatcaagtggcacgtgatttgaaacgcgctggctttaattgcgaagcgattcat
ggcgatcgcgatcaacgcgcgcgcactgaagcgctgactaaatttaaagccggtgaaaca
caagtgctcgttgccaccgacgtggccgcgcgcggtttggatatttctgatttgccgtat
gtggtgaattacgaattgccgaccaacgccgaagattacgtgcatcgtattggccgtacc
ggtcgtgctggtgccactggtgtggcgatttcactggttgcgcccgaagaaggcaaggct
tacgaaggcatcaaaaagctactcaatcgcgaaatgccgttgattccagtgcatggcttc
tcgccaggtacgattcaagtgatcgacgagcgtccagcgcgggcagagcgccgtcatcat
gttgatccaaccaccgataagggcgtaaaagaatatcaacgcatgccatcgcgcgcgcag
cgtgatgccagcgaagtgcccgctttcccgagtaatttgcctaaattacccaagcgtgca
ccacaagttgcagcgttgttcttgccgaaaaaacacggttaa
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