Deefgea piscis: HQN60_02375
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Entry
HQN60_02375 CDS
T06622
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dee
Deefgea piscis
Pathway
dee02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HQN60_02375 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dee03021
]
HQN60_02375 (rpoD)
Transcription machinery [BR:
dee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HQN60_02375 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
LTXXQ
SPO22
HTH_20
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
QKJ65670
UniProt:
A0A6M8SQ54
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Position
complement(489431..491371)
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AA seq
646 aa
AA seq
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MAADQKLNKDNLELNGGKQAEEKLDPEERKAKFKTLIVLGKERGYLTYAEINDHLPEDML
DAEQIEGIISMISNMGIQVYDEAPDAEDLLMSDAPAAVADEDAAEEAEAALSSVDADFGR
TTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMITAISACPTTIAQIIDLVERGLN
DEIRIDDVIDGFIDPNAVEEEETALDLPDPDAVLEESDGDDEEEAEDDGGAAAASANLEL
LKTQAREHFEVINDLYGRMLEALIDHGTASPTYILLQQSIAIEFQKIRFSARQVESLCDV
LRGMVDDIRTHERQIMDLCTRRVGMPRDYFIKNFPGRETDLTWVSEEIAAEKSYSGIMFR
YKHAIMEQQQKLNELQESARLSIRELKEISRHMSTGEAKAKRAKREMIEANLRLVISIAK
KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKMNRIQRQILQETGNEATPEELAERMEMPEDKIRKILKIAKEPISMETPIG
DDDDSHLGDFIEDANNMAPADAAVYAGLREATKEVLDTLTPREAKVLRMRFGIDMSTDHT
LEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFIENNASEQ
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagatcaaaaactaaataaagataatcttgaattaaacggcggcaaacaggcc
gaggaaaaactcgaccctgaagaacgcaaagccaaatttaagacgctaatcgtcctcggt
aaggaacgtggttacctcacgtacgccgagattaacgatcacctcccagaagacatgttg
gatgccgagcaaatcgaaggcattatcagcatgatctccaatatggggatccaagtctac
gacgaagctcctgatgctgaagatctgttgatgtccgacgcgcctgccgcggtggcagat
gaagatgcagcggaagaagctgaagctgctctgtcttcagtcgatgctgactttggccgt
acaacggatcctgtccgcatgtatatgcgcgaaatgggaaccgttgagctcttgacgcgt
gaaggcgaaattgaaatcgccaaacgcatcgaagacggcttaaagcacatgatcacggcc
atttcggcatgtccaacgacgattgctcaaattattgatttggtcgaacgtggtttgaat
gatgaaattcgtattgatgatgtcatcgacggctttatcgatccaaacgcggttgaagaa
gaagagactgcgctagatttgcctgatcctgatgccgtgctcgaagagagtgacggtgat
gatgaggaagaagccgaagatgatggtggcgccgcagctgctagtgccaatctagagcta
ctaaaaactcaagcgcgtgaacattttgaagtgattaacgacctttacggtcggatgctt
gaagcattgattgatcacggcacagcatcaccaacctatatcttgctacagcaatcgatt
gcgattgagttccagaaaattcgtttttctgctcgtcaagttgaatcgctatgcgatgta
ttgcgcggaatggtcgatgatattcgcacgcatgaacgccaaatcatggatttatgcacg
cgccgtgtcggtatgccacgtgattatttcatcaaaaattttcctgggcgtgaaactgat
ttgacgtgggtttcggaagaaatcgcggcagaaaaaagttactccggcatcatgttccgt
tataaacacgcgatcatggagcaacagcaaaaactcaacgaactgcaagagtcagcgcgt
ttgagtattcgtgagttgaaagaaattagccgccatatgtcgacgggtgaagctaaggcc
aaacgcgcaaagcgcgaaatgattgaagccaacttgcgtttggtgatttctatcgccaaa
aaatacaccaaccgtggtttgcaattccttgatttgattcaggaaggcaatatcggcttg
atgaaagcagtagataaattcgaatatcgccgtggttataagttctcaacatatgccaca
tggtggattcgtcaggcgattactcgctcgattgctgaccaagcacgcacgattcgtatt
ccggtacatatgatcgaaacgatcaataagatgaaccgtattcagcgccagattttgcaa
gaaacaggtaacgaagcaacacctgaagaattggctgaacgcatggaaatgccggaagac
aaaattcgcaaaatccttaaaatcgccaaagagccgatttcaatggaaacgccgattggt
gatgatgatgattcacacctcggtgattttattgaagacgctaataatatggcgcctgct
gatgctgccgtttatgccggtttgcgtgaagcgaccaaagaagtgcttgataccttaaca
ccacgtgaagccaaagtgctacgcatgcgttttggtattgatatgagtactgatcatacg
ctcgaagaagttggtaaacagtttgatgtaacgcgtgagcggattcgtcaaattgaagcc
aaggctctacgtaagctgcgtcatccaactcgttcagaaagattgaagagttttattgaa
aataacgccagcgaacagtag
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