Deefgea piscis: HQN60_05090
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Entry
HQN60_05090 CDS
T06622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dee
Deefgea piscis
Pathway
dee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN60_05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dee03019
]
HQN60_05090
Enzymes [BR:
dee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HQN60_05090
Messenger RNA biogenesis [BR:
dee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HQN60_05090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
DegT_DnrJ_EryC1
Helicase_C_2
Cas3-like_C_2
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QKJ66139
UniProt:
A0A6M8STI1
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All DBs
Position
1055373..1057241
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AA seq
622 aa
AA seq
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MSELNFASLGLAEPLLRAVADTGYTTPTPIQAQAIPLVVQGGDLLAAAQTGTGKTAGFTL
PILQLLQAKEPLEAKGRPRVLILTPTRELAAQVEESVQTYSKYVKITSMVVFGGVNIRPQ
QARLRSPIDILVATPGRLLDLVNQRSVDLSGIEILVLDEADRMLDMGFIHDIKKLMSIFP
KERQTLLFSATFSDEIKELADKLLKNPGLVEVARRNTTNELISQRVHLVDRDKKLPLLTQ
LIKDGNWHQVLVFMRTKHACNKVAEKLNAAGISAMAIHGNKSQNARTAALAQFKSGELQV
LVATDIAARGLDIEELPHVVNFELPNVAEDYVHRIGRTGRAGCTGEAVSLVCVDELKLLA
EIERITKQDIPKFCLEGFEADLRVKPEPIVRGGLGRDRPPRDPNRNPRAPRGPAAAGGAR
LNGARSKALAETAAAQTAAKNEARAERRPRADRAEGETEQRRPRTDGEQRRPRAEGATDT
RRPRPDGATDTRRPRSDALGATDTRRPRDGAPRNNNPRNAPRHDSVLGAAPAPRRERINY
DEQQPLSNANTLPGELMRSGRSGQGQTRGYQGGGRNGGPGVTRNASDGFGAPRGDRPQSR
GPRSSSPTAALLGGSGNKRRGD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacttaattttgctagccttgggctagccgaaccacttttgcgtgccgttgcc
gatacgggctacaccacacctacaccgattcaagcccaagccattccattggtggtacaa
ggcggcgatttactcgctgcagcgcaaacgggcaccggtaaaaccgccggttttactttg
ccgattttgcaattattgcaggccaaagaaccactcgaagccaaaggtcgtcctcgtgtt
ttgattctaaccccgacgcgtgagcttgccgctcaggtggaagaatcagttcaaacgtat
tcgaaatacgtcaaaatcacttcaatggtggtgtttggtggcgtaaatattcgtccacaa
caagcgcgcttacgctcgccgattgatattttggtcgcgacaccgggccgcttgctcgat
ttggtgaatcaacgctcggttgatttgtctggcattgaaatcttggtgctcgatgaagcc
gatcgtatgctcgatatgggtttcattcacgacattaaaaaattaatgtcgattttcccc
aaagagcgccaaaccttgctgttctcagcaacgttctccgatgaaatcaaagagctcgcc
gacaagctacttaaaaacccaggtttggttgaagttgcgcgccgtaataccaccaatgaa
ttaattagccagcgcgtgcatttagttgaccgcgataaaaaattgcctttgttgacgcaa
ttgatcaaagacggcaattggcatcaagttttagtatttatgcgcaccaaacatgcgtgt
aataaagtggccgaaaaactcaatgcggccggcatttcggcgatggcgattcatggcaat
aaaagccaaaacgcccgtactgctgcattagcccaatttaaatcaggcgaattgcaagta
ttggttgccaccgatattgcggcccgtggtttggatatcgaagaattgccgcacgtggtg
aactttgaattgcccaacgtggccgaagattatgtacatcggattggccgtactggccgc
gccggttgtactggtgaagcggtttccttggtatgtgttgacgagttaaaactcctcgct
gaaatcgagcgcattaccaagcaagatattccaaaattctgcttagaaggctttgaagcc
gatttacgcgtgaagccagaaccgattgttcgtggtggcttaggccgtgatcgcccacca
cgcgatccaaaccgtaacccacgcgccccacgtggcccagctgcagctggtggcgcacgt
ttgaatggcgcccgcagcaaagcgttagctgaaactgcggcagcacaaaccgctgccaaa
aacgaagcacgcgctgagcgtcgcccgcgcgctgaccgtgcagaaggcgaaactgagcaa
cgtcgtccgcgtaccgatggcgagcagcgccggccacgcgcagaaggcgcaacggatacc
cgccgtccacgtcctgatggcgcgactgatacccgtcgcccgcgttcggatgccttaggt
gctaccgatacccgtcgtccacgtgatggcgcaccacgcaataacaatccacgcaatgca
ccgcgtcatgattcagtattgggcgctgcgccagcaccgcgtcgcgagcgcatcaattat
gatgagcagcaaccgctgagcaatgccaataccttaccgggtgaattgatgcgtagtggc
cgtagcggccaaggtcaaacgcgtggctatcaaggtggtggtcgtaatggtggtccaggt
gtcacgcgtaatgccagcgatggctttggtgcaccacgcggcgatcgtccacaaagccgt
ggtccacgctctagcagccctactgccgcactacttggcggcagcggtaataaacgtcgc
ggcgattaa
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