Deefgea piscis: HQN60_09280
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Entry
HQN60_09280 CDS
T06622
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dee
Deefgea piscis
Pathway
dee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQN60_09280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dee03019
]
HQN60_09280
03009 Ribosome biogenesis [BR:
dee03009
]
HQN60_09280
Enzymes [BR:
dee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HQN60_09280
Messenger RNA biogenesis [BR:
dee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HQN60_09280
Ribosome biogenesis [BR:
dee03009
]
Prokaryotic type
rRNA processing factors
HQN60_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QKJ66875
UniProt:
A0A6M8SNV1
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All DBs
Position
complement(1973369..1976278)
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AA seq
969 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKSNIYKGVITRIEPSLEACFVDY
GCDRHGFLPFKEIARSYMGDGEGGRGRVAGNLSEGQEVIVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERNELRAAMDQLDTPVGTSLIARTAAIGRNAEELQW
DLSYLLQLWRAIEDAATKQTGAFLIYQESSLVIRAIRDYFQPDIGELLIDKRDIYEQAQQ
FMAHVMPGSAHKVKFYQDDVPLFSRFQIEHQIETAYSREVSLPSGGAIVLDRTEALWSID
VNSAKATRGGDIEETAVRTNLEAADEIARQMRLRDVGGLIVIDFIDMENPKNQREVENRV
REALHHDRARVQTGKISRFGLLELSRQRLQPSLEETSHMACPRCHGTGFIRGIESSALHI
LRIIQEEAMKENTGAIHAQVPVDVATFLLNEKRAELFAVEDRLKVGVILIPNTHLETPNY
SITRLRHDDVNQLEDILPSYRMVEQPTDEGYQPAKAKEEQAKRQEAAVKGITPSQPAPAT
SERPTRQPAPTVQISLWQKIVSWFSATPEVVKAEEVKPAPRPQRGRNDQRRNRNEPRPDS
QRGETRDATRDRTDRNARPSNKPRIEEDLQKRDNQNRPEKAERPERAERPERQPRPERQP
RAERTPRNEQRSETLKADLAAVTTAPENAATASTDSNAETRSRRRRGRRDRRDRTDAETT
VVESTAIAAETPVTEVEVMKTSAAEQAAPAQIASAPVVSVAPAAPAAPAAPAAPAAPAAP
AAPAAPVAPVAPAAPAAPVAPVAPVAPAPAASPTIASTPQVAEEPVAAAPAMQPAAASES
VTATPAVHKEVVASVTTSNVEAPAVETKAAPLEAASNLTQVATRQTTAPQPEVEINTTAT
RRRNAVAKPVIVNEAIELKMVETATTVVVATAIDVQPLKTVRRRRDVAAETQAKNISADG
LSQIETHQD
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctatttaacgcaacacaagctgaagagctacgtgttgcgattgtcgac
ggtcaaaaactgatcgacctcgacatcgaaaccgttggtaaagaacaacgtaaatccaat
atctacaaaggcgtcatcactcgcatcgagccatcgcttgaagcctgcttcgttgactac
ggttgcgaccgccacggctttttgccatttaaagaaattgctcgctcatacatgggtgac
ggcgaaggtggccgtggccgcgtagctggcaatctttctgaaggccaagaagtcatcgtt
caagtagaaaaagacgaacgcggcaataaaggcgcagccctcactacctacatcagcttg
gccggtcgttatttagttttgatgccaaataacccacgtggcggcggtgtttctcgccgt
atcgaaggcgaagagcgcaatgaattgcgcgcagcaatggatcaactagatacgccagtg
ggcaccagcctcattgcacgtactgccgctattggccgcaacgccgaagaattgcagtgg
gatttatcttatttgctacaactgtggcgcgctatcgaagacgcagcaaccaaacaaacc
ggcgcattcttgatctatcaagaatctagcctggtgattcgcgccatccgcgattacttc
caaccggatatcggtgaattactcatcgacaaacgtgacatctacgagcaagcccagcag
tttatggcgcacgtgatgccaggcagcgcgcacaaagtaaaattctatcaagatgatgtg
ccactgttttcacgctttcaaatcgaacatcaaattgaaaccgcttattcacgtgaagtg
agcttgccatccggcggcgccatcgtactcgatcgcaccgaagcgttatggtcaatcgac
gtcaactcggctaaagctactcgcggtggtgacatcgaagaaacagccgtgcgtaccaac
cttgaagcggccgatgaaatcgcccgtcaaatgcgtttgcgcgacgtaggtggtttgatc
gtgatcgactttatcgacatggaaaacccgaaaaaccaacgcgaagttgaaaaccgtgtc
cgtgaagcattacaccacgaccgtgctcgcgtacagactggcaaaatcagccgcttcggt
ctacttgaattatcacgtcaacgcctgcaaccaagcttagaagaaaccagccacatggcg
tgcccacgctgccacggcaccggtttcattcgcggcattgaatcatcggcattgcacatc
ttgcgcatcattcaagaagaagcaatgaaagaaaacaccggcgcaatccacgcccaagtg
ccagttgatgtcgccacattcttgctcaatgaaaaacgtgcggaattgtttgcagttgaa
gatcgcctcaaagtcggcgtgattttgattccaaatacgcacctagaaaccccaaactac
agcatcacgcgtttacgccacgatgatgttaaccaacttgaagacatcctgccttcttat
cgcatggttgaacaaccgacggatgaaggctatcagccagctaaagccaaggaagaacaa
gccaagcgtcaagaagcggctgtaaaaggcatcacaccgtcacaacctgcccctgcgacc
tcggaacgcccaactcgccaacctgcgccgacagtacaaatctcgttatggcaaaaaatt
gtttcatggtttagtgctacgccagaagtcgttaaagctgaggaagttaagccagcaccg
cgtccacaacgcggccgcaacgatcaacgccgcaatcgcaacgaaccacgtccagatagt
cagcgcggtgaaacgcgtgatgcaactcgtgatcgtaccgatcgtaatgcgcgcccaagc
aataagccgcgcattgaagaagatttgcaaaaacgtgacaatcaaaaccgccccgaaaaa
gcggaacgccctgagcgcgccgagcgccctgaacgtcagccacgtccggaacgccaacct
cgtgcagaacgtacgccgcgcaatgagcaacgcagtgaaacactcaaggccgatttggct
gcagtcaccacagcgccagaaaacgcggcaacagcgtcaactgacagcaacgcagaaaca
cgtagccgtcgccgccgtggtcgtcgtgatcgtcgcgaccgtactgatgctgaaacaaca
gttgttgaaagcactgcaattgcggctgaaacaccagtaactgaagttgaagtgatgaag
acaagcgcagcggaacaagcggctcctgcacaaatcgctagcgctccagtagtgtctgta
gctcctgctgctcctgctgctcctgctgctcctgctgctcctgctgctcctgctgctcct
gctgctcctgctgctcctgttgctcctgttgctcctgctgcacctgctgcacctgtagct
cctgtagctcctgttgcacctgcaccagctgcatcgcccacaatcgcttcaacaccacaa
gtagctgaagaaccagttgctgcggcaccagcgatgcaaccagcggctgcaagcgaatct
gttactgcaacgcctgccgtacacaaagaagtcgtagcgagtgtgacaacaagcaatgta
gaagcacctgctgttgaaaccaaagccgcccctctagaagctgctagtaacttaacgcaa
gttgcaacgcgtcaaactacagcacctcaacctgaggtggagatcaatacgactgcgacg
cgtcgacgcaatgcagtggctaaaccagtcatcgtcaatgaagcaattgagctaaaaatg
gttgaaacggccactaccgttgtcgtggcaacagcgattgatgttcagccactaaaaaca
gttcgtcgccgccgcgatgttgctgcagaaacacaggcaaaaaatattagtgctgatggt
ttatctcaaatcgagactcatcaagactaa
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