Deefgea piscis: HQN60_12835
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Entry
HQN60_12835 CDS
T06622
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dee
Deefgea piscis
Pathway
dee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HQN60_12835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dee03400
]
HQN60_12835 (mfd)
Enzymes [BR:
dee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HQN60_12835 (mfd)
DNA repair and recombination proteins [BR:
dee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HQN60_12835 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKJ67522
UniProt:
A0A6M8SQH8
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Position
complement(2736881..2740279)
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AA seq
1132 aa
AA seq
DB search
MSQLPQLPRANERLKLAQPHGSADAMLLADYAQVARPLVILTANAQEAGRLKDELSFFLP
EKTVLQLPDWETLPYDHFSPHSDLISERLATLWQARQNAVDVLIVPLQTAMGVLPPVEFL
TATTFFIKKGDAFDADQLRADMAFAGYNHVTQVYGPGEFSIRGGLIDLFPMGSTLPFRID
LFDNEIESIRTFDVDTQRSLYPVPEIRLLPAREFPTDEAGCKLFRQNFREAFEGDPSKAR
LYKDISNGVIPAGIEYYLPLFFEHTATVFDYLPKEAVLVLHGPLMGAAEQYWQDIAERHK
LSYGDKDRPLLPPRTLFVAPDLLFSHIKNYRRIELGDGETSLTQPLPALDVDRRNDNPIR
RLNDFVEHYPGKIVLSAESLGRRETMLQFFAEYGFKPTLVENWQAALDSKAHALLLASPL
FRGFEWRSESIAIITEADLYPSVIQSRGKKQQKRSNTDAMLRDLSELKIGDPVVHEAHGI
GRYMGLTSMDLGDGPTELLLIEYSGNDKLYVPVSQLHVISRYSGGASDSAPMHKLGSGSW
EKTKRKAAEQVRDTAAELLNLYARRAAREGHAFEWSPHDYEAFAAGFGFEETADQAGAIE
AVLVDMRVKQPMDRLVCGDVGFGKTEVALRAAFAAVAGGKQVAVLVPTTLLAEQHFQTFV
DRFSDWPIKVAELSRFRSGKETAAAIAGLADGSVDIVIGTHKLVQPDVVFKQLGLVIIDE
EHRFGVRQKEQLKALRANVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNKRLAVKTFV
SKFSDGIIREAVLRELKRGGQVFFLHNEVDTIENMREKLAALLPEARIGVAHGQMRGREL
EHVMRDFTQQRFNLLLCSTIIENGIDIPNANTILMNRADKFGLAQLHQMRGRVGRSHHQA
YAYLLIPDVESISSDAKKRLEAIQMMEELGSGFYLAMHDLEIRGAGEVLGDSQSGEMHEI
GFALYSQMLKEAVKALKAGKEPDLSQPLGVTTEINLHSPALLPEDYCPDVNERLSLYKRL
ASSDEKDELNDIHQELVDRFGLLPDAAKVLLDCHRLRMLAKPLGISKIDAAETAIIIHFT
QNTVVEPMKIIKLIQNKKNYKLQGQDKLRIEGDWPTSTLRTARITELIRELV
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaattgcctcaactgcctcgcgccaatgagcgcctcaaactcgcacaaccccac
ggctctgccgacgccatgctcttggccgactacgcccaagtcgcgcggcccttagtgatt
ttgacggccaacgcgcaagaagcgggccgactgaaagacgagctcagcttctttttgcca
gaaaagacggtcttgcagctacccgattgggaaacgctgccttacgatcatttctccccc
cattctgacctgattagcgagcggctagccacgctgtggcaagctcggcaaaacgccgtt
gacgtgctcatcgtgccgctacaaacggcgatgggggtgttaccgcccgttgaattttta
accgccacgactttcttcattaaaaaaggcgatgcgtttgacgccgatcagttgcgcgcc
gacatggcctttgctggttacaaccacgtcacccaagtgtatgggcccggtgaattttcg
attcgcggtggcttaattgatttatttcctatgggcagcacgctgccgtttcgaattgat
ttattcgacaatgaaatcgaatcgattcgcacctttgacgtagacactcagcgcagcctc
taccccgttccggaaattcgtttactcccggccagggaattcccgaccgatgaagccggt
tgtaaattattccgccaaaactttcgcgaagcgtttgaaggcgatccatccaaagcccga
ctctacaaagacatttcaaacggcgtaattcctgccggcatcgagtattacttaccacta
ttttttgagcacacggccactgtttttgactacctccccaaagaggcagtattagtctta
cacggcccattaatgggggctgcagagcaatactggcaagatattgctgaacggcacaaa
ctgagctatggcgacaaagatcgtccactgctgccaccacgcacgctatttgtcgcgcca
gacctgttatttagccacatcaaaaactatcgccgtattgagctgggtgacggtgaaacc
agtctcacccaaccgctaccggcactcgatgtggatcgtcgtaacgacaatccaatccgt
cgactcaatgattttgttgagcactatccgggcaaaattgtgctgagcgccgaaagccta
ggtcgacgtgaaaccatgctgcagttttttgccgaatacggctttaaaccgaccttggtc
gagaattggcaagccgctttagacagcaaagcgcacgcgctattgctcgcctcgccgctg
tttcgtggttttgaatggcgcagcgaatccatcgccatcattactgaggccgacctctat
ccatccgtgattcaaagtcgcggtaaaaaacaacaaaaacgcagcaataccgacgccatg
ctgcgcgatttatccgagctaaaaattggcgatccagtggtgcacgaagcgcacggtatt
ggtcgctatatgggcctcacgtcgatggacttaggcgacgggccaaccgagttgctactg
attgaatactcaggcaatgacaagctgtatgtgccggtcagccaattacacgtcatttct
cgctattctggtggcgcttcagactcagcgccgatgcataaactcggctcaggctcgtgg
gaaaaaaccaagcgcaaagccgccgaacaagtgcgcgataccgcggccgaattactcaat
ctctacgcgcgccgcgcggcgcgtgaaggccatgcgtttgaatggagtccgcacgattac
gaagcctttgcggcgggctttggctttgaagaaaccgccgatcaagctggcgccatcgaa
gcagttttggtcgatatgcgcgtcaagcaaccgatggatcgcttggtgtgtggcgacgtc
ggctttggcaaaaccgaagtggcgctacgcgcggcttttgctgcggtggccggtggcaag
caagttgccgttttagtcccaaccactcttttggccgagcaacattttcagacctttgtc
gatcgcttttcggattggccgatcaaggtcgccgagctatcgcgctttcgctcgggcaaa
gaaactgcggcagcgattgcggggctggctgacggcagtgtcgacatcgtcattggtacg
cacaaattagtccagcccgacgtagtgtttaaacaactgggcctcgttatcatcgacgaa
gagcatcgttttggcgtcagacaaaaagagcagctcaaagcgctacgcgccaatgtcgac
gtactcacgctcaccgcaacgccgattccgcgcaccttggcgatgagtttagaaggcttg
cgtgatttttcagtgattgccaccgcgcccaacaaacgcttggccgttaaaacctttgtg
tctaaattctctgacggcattattcgtgaagccgtactgcgcgaactcaagcgcggtggg
caagtgtttttcttacacaacgaagtcgacaccattgaaaacatgcgcgaaaaactcgcc
gcactactacccgaagcgcgcatcggcgtggcgcacggccaaatgcgtggccgcgagcta
gaacacgtgatgcgcgattttacccagcagcgttttaatctattgctgtgctcaaccatt
atcgaaaacggcatcgacattccaaacgccaatacgattttgatgaatcgcgccgataaa
tttggcttggcgcaattgcaccaaatgcggggccgtgttggtcgctcacaccatcaagcg
tatgcctacttgctgattccagatgtggaaagcattagcagcgacgccaaaaagcgcctt
gaagcaattcagatgatggaagaactcggctctggtttttatctggcgatgcacgattta
gagattcgcggcgcgggtgaagtactgggcgactcacaatcgggtgaaatgcatgaaatt
ggctttgcgctgtactcgcaaatgctcaaagaagcggtcaaagcgctcaaagccggtaaa
gagcctgatttgtcgcaaccgctgggcgtcaccactgaaatcaatttgcattcaccggcg
ctattgccagaagactactgcccggatgtgaatgagcgtttgtcgctgtataaacgctta
gcaagtagcgacgaaaaagacgagctcaatgatattcaccaagaactggtggatcgcttt
ggcttactgcctgatgcagccaaagtgctgctcgattgccatcgcttacgcatgctcgcc
aagccgctgggcattagcaaaatcgatgccgctgaaaccgcgatcattattcatttcaca
caaaacaccgttgttgagccaatgaaaatcatcaaactgattcaaaacaaaaagaactac
aaactgcaagggcaagacaagctgcgtattgagggcgattggccgaccagcaccttacgc
accgcccgaattaccgagctgatccgcgaactagtgtaa
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