Desulfovibrio sp. G11: CNY67_04715
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Entry
CNY67_04715 CDS
T05183
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
def
Desulfovibrio sp. G11
Pathway
def03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
def00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNY67_04715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
def03021
]
CNY67_04715 (rpoC)
03400 DNA repair and recombination proteins [BR:
def03400
]
CNY67_04715 (rpoC)
Enzymes [BR:
def01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNY67_04715 (rpoC)
Transcription machinery [BR:
def03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CNY67_04715 (rpoC)
DNA repair and recombination proteins [BR:
def03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CNY67_04715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATD80791
UniProt:
A0A807ZIY9
LinkDB
All DBs
Position
complement(1039343..1043512)
Genome browser
AA seq
1389 aa
AA seq
DB search
MSLDDLFTARGTSANVTNIRNLKAIQISIASPEAIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGQTNLQKRQVISEDQYLQILDHYGSD
EVLTVGMGAEAVRSLLEELELEKLRTELREEGEATKSQTKKKKLTKRLKIVEAFLESDNK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VITVGPYLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKMVEREELVVWDILS
EVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAVHIPLS
VEAQIECRVLMMSTNNILSPANGGPVIVPSQDIVLGLYYMTVERSFEKGEGMSFCAPWEV
ESAYDGGMVSLHARVKVRMPDGHTYDTTPGRVLVSDILPEKLSFDHVNCVLTKKNIARLV
GAAYGQCGIKATVILCDKLKDMGYEFATRAGVTIGVKDLTIPDRKKDILATSQAEVDDIE
HQYRDGIITRTEKYNKVVDVWTKATQDVSTEMIKEISYDVLTDPKTGKQEKNQSFNPIFM
MSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVAEHDCGTVDGIELTHLKDGGDVKTPLSERIIGRVL
LYPVHDPDAPEEILLPENTIISEKEAQIISDKGISSVTVRSPLTCQAERGICALCYGRDL
GRGHLVNTGETVGIIAAQSIGEPGTQLTMRTFHIGGTASSTIEKNKFEALNAGRVILNRV
KAVTNKDGVHLVLGKSGQLTIVDAQGREREKYILPNGARLLVHDGQEVVKGTVMAEWDPF
NEPFVCEEEGTLRFTDIIDGKTVQEKVDDITRQASLTIMEYRTTNFRPAISICDDNGNVK
KRSHGGAAAIYSLPVGSIIMVKDGEHIQAGDIIARKPRETAKTKDIVGGLPRVAELFEVR
KPKDMAVVSEISGTVTYAGESKGKRKLVVTPEIGEAKEYLVPKGKHITAADGDFVEAGDP
LTEGYPELHDILRTKGEKYLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLKKVTILDT
GGTSFLVGEQVDKGEFKHENQKAIAEGRQPATAEPLVLGITQASLTTSSFISAASFQETT
KVLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYVNGEIMVPDQKERPDKFLEELEE
NPILVDLNS
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacgatcttttcaccgctcgcggcacgtcggccaacgtgaccaacatccgc
aatctgaaagccatccagatttccattgcctctcctgaagccatccgcgaatggtcctat
ggcgaggtaaaaaagccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggc
cttttctgcgccaagatcttcggccccgtgaaggactatgagtgcaactgcggcaagtac
aagcgcatgaagcaccgcggcattgtctgcgaaaaatgcggagttgaagtcattgcgtcc
aaggtgcgtcgcgagcgcatggggcacattgaactggccgcgcccgtagcccacatctgg
tttttgaagaccctgccttccaagatcggcaccctgctggacatgaccatggccgatctg
gaaaaggtgctgtactttgactcttacattgtgctcgacccgggccagaccaacctgcag
aaacgccaggtcatttccgaagaccagtatttgcagattctggaccactacggcagcgat
gaagtgctgaccgtgggcatgggtgctgaagccgtgcgcagcctgctggaagaactggag
cttgaaaagctgcgtaccgaactgcgcgaagaaggcgaggccaccaaaagccagaccaag
aagaaaaagcttaccaagcgtctcaagattgttgaggcttttcttgagtcggacaacaag
cccgaatggatgattatggaagttattcctgtcatcccgccggagctgcgtccgctcgtg
ccgctggacggcgggcgtttcgccacctccgacctcaacgatctgtaccgccgcgtcatc
aaccgtaacaaccgcttgaagcggcttatggagcttggcgcgccggaaatcatcatccgc
aacgaaaagcgcatgctgcaggaagcggtggacgccctctttgacaacggccgccgcggc
cgcgccattgcaggaaccaacggccgtcccctcaagtccctttcggacatgatcaagggc
aagcagggccgtttccgccagaacctgctgggcaagcgcgtggactattccgggcgttcg
gtcattaccgtcggcccttacctcaagctgcaccagtgcggtctgcccaagaagatggcg
cttgaactcttcaagcccttcatctattcggagctggaaaaacgcggtcatgcctccact
atcaaaagcgccaaaaaaatggtggagcgcgaagagctggttgtctgggacatcctgtca
gaagtggtgcgcgaataccctattcttctcaaccgcgccccgaccctgcaccgcctcggc
attcaggctttcgaaccgctgttggtcgaaggcaaggccatccgtctgcacccgctggtc
tgctccgcatacaacgcggactttgacggcgaccagatggctgtacatattcccctgtct
gtagaagcgcagatcgaatgccgcgtgctcatgatgagcaccaacaacattctttcaccc
gccaacggcggccctgttatcgtgccttcgcaggatatcgtgcttggcctctactatatg
acggtggaacgcagctttgaaaagggcgagggcatgagcttctgcgccccgtgggaagtg
gaaagcgcctatgacggcggcatggtttcgctgcacgcacgcgtcaaggtgcgcatgcct
gacgggcatacctacgacaccacgcccggccgtgtgcttgtgagcgacattctcccggaa
aagctgtcttttgaccatgtcaactgcgtgctgaccaagaagaatatcgcccgccttgtg
ggcgcggcctacggccagtgcggcatcaaggccacggtcattctttgcgacaagctcaag
gatatgggctacgagttcgccacccgcgccggtgtgaccatcggcgtcaaggacctgacc
attcccgaccgcaagaaagacattcttgccacgtcccaggccgaagtggacgacatcgaa
caccagtatcgtgacggtatcatcacccgtactgaaaagtacaacaaggtggtggacgtg
tggaccaaggccacgcaggacgtttccacggaaatgatcaaggaaatctcctacgatgtg
ctcactgatcccaaaaccggcaagcaggaaaagaaccagagcttcaaccccatcttcatg
atgtccaactccggcgcgcgaggcaaccaggaccagatgcgccagcttgcgggcatgcgc
ggccttatggccaagccttcgggtgaaattattgaaacgcccatcacctcctccttccgt
gaggggctgtcggtgttgcagtacttcacctccacacacggcgcgcgtaaaggtctggcg
gacacggccctcaaaacggccaactccggttacctcacccgccgcctggtggacgtggtg
caggatgtcatcgtggccgaacacgactgcggtacggtggacggcatcgagctgacccac
ctcaaggacggcggcgatgtcaaaacgcccctgtctgaacgcatcatcggccgcgtactg
ctctatcccgtgcatgatcccgacgctccggaagaaatcctcttgcccgaaaacaccatc
atttcggaaaaagaggcccagatcatcagcgacaagggcatttcctcggttaccgtgcgc
tcgcccctcacctgccaggccgaacgcggcatctgcgccttgtgctacgggcgtgacctt
ggccgcgggcatctggtcaatacgggcgagaccgtgggcatcatcgcggcacagtccatc
ggtgagcccggcacgcagctgaccatgcgtaccttccacatcggcggtacggcatccagc
accattgaaaagaacaagtttgaagccctcaacgcgggtcgcgtcatcctgaaccgggtc
aaagccgttaccaacaaggacggcgtgcacctggtgctgggcaagagcggccagctgacc
atcgtggacgctcagggccgcgaacgcgaaaagtacattctgcccaacggcgcacgcctg
ctggtgcacgatgggcaggaagtggtcaagggtacggtcatggccgaatgggaccccttc
aacgaaccttttgtgtgcgaagaagaaggtaccctgcgctttaccgacatcattgacggc
aagaccgtgcaggaaaaggtggacgacatcacccgtcaggccagcctgacaatcatggaa
taccgcaccaccaacttccgcccggccatctccatctgcgatgacaacggtaacgtgaaa
aagcgcagccacggcggcgcagcggccatctatagcctgcccgtcggctccatcatcatg
gtcaaggacggcgagcatatccaggctggcgacatcatcgcccgtaaaccccgcgaaact
gcaaaaaccaaggacatcgtgggcggtctgccccgcgtggccgagctttttgaggtgcgc
aagcccaaagacatggccgtggtttccgaaatatcgggtacggtcacctatgcgggcgaa
tccaagggcaaacgcaagctggttgtcacgcctgaaatcggcgaagccaaggaatacctg
gttcccaagggcaaacacattaccgccgctgacggcgactttgtggaggccggagacccg
ttgaccgaaggctaccccgaactgcacgacatcctgcgcaccaagggcgaaaaatacctg
gcccgctatctggtggacgaaattcaggaagtctaccgcttccagggcgtgggcattgac
gacaagcacattgaagtcatcgtgcgccagatgcttaaaaaagtgaccattctggatacc
ggcggcaccagcttcctggtgggcgaacaggtggacaagggcgaattcaagcatgaaaac
cagaaggctatcgccgagggccgccagcccgccacggcggaacctctggtgctgggcatc
acccaggcttcgcttaccacgtcctccttcatctcggcggcttccttccaggaaactacc
aaggttctcaccgaagcctccctcaagggcaagatggactacctgcgcggactcaaggag
aacgtcatcgtgggccgcctcattcctgctggtacaggctaccgtgaatacgtcaacggc
gagatcatggttcccgaccagaaggaacgccccgacaagttccttgaggagcttgaagaa
aaccctattctggttgatctgaacagctag
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