Desulfovibrio sp. G11: CNY67_10275
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Entry
CNY67_10275 CDS
T05183
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
def
Desulfovibrio sp. G11
Pathway
def03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
def00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNY67_10275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
def03019
]
CNY67_10275
03009 Ribosome biogenesis [BR:
def03009
]
CNY67_10275
Enzymes [BR:
def01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CNY67_10275
Messenger RNA biogenesis [BR:
def03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNY67_10275
Ribosome biogenesis [BR:
def03009
]
Prokaryotic type
rRNA processing factors
CNY67_10275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATD81720
UniProt:
A0A807ZL80
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All DBs
Position
2293731..2296961
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AA seq
1076 aa
AA seq
DB search
MTKDQETPVTETQNSGESGQKTSKPKSRASARGKSATASEATAGQAEKTSSRPSPASKTS
SSSSPSADTPAPKASKPRAGKSTATKPVAASKSTAAKAGSAEDASAAKGAAKTKTVEKTA
TKAKSTAKPAVKSKAAAGSEAEGVEKTVKKAKAEEKTPGAASSAAAAPKRTAPKAATAKS
KQATTKSTGKPAAGTAKSGSEDAPADKTASAAAGAKTAKSAPKATAGTAAPKAVAAKAPD
AKDAAPSVAQSPKSASQTGEKLPGADAAKAPADTAANKVQTAAPSAAAKDGTVAAGAPEA
GAKAASAARSRAATKARAATARKKTTDKSADKSAAEGRVAPAQPKSTAAAATVAGAAEKI
SPPSAGATAPAMPTPPASSSAREGKDLTPPAPAAAVAEHAAEHTAGQPRSAANAEKAKPA
ASSAAHPTAAHGTVKTETAVLALAATERLALTGRNSLAIENTELLALTLTTSETVPQEEN
GAGAEASETSGEVPRRKNRRGRRGGRGRNRKKELNGENGDALAAGTSAADSVHSEDSLQN
EDEGFSAESPQAPAVSGNAPDEAAAKESPGAAPAASSKKTAPTETGKHKSKSESANARRR
MFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGAG
KNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWL
SLAGRFLVLTPGQEQIGVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKTTL
KNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQSI
RETVNLLFPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEALM
AVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIEVE
KTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEWQA
LQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagaccaagaaaccccagtgacagagacccaaaattcaggcgaatcaggccag
aagacatccaaacccaaaagccgcgcttctgcccgcggaaaaagcgccacggcttccgaa
gccactgccggccaggcggaaaaaacttcatcccgaccctcccccgcttccaagacttct
tccagttcttccccatctgccgatacgcccgcccccaaagcaagcaagcccagggcaggt
aaaagcacggccaccaagcccgttgccgcctccaaaagcacggcggcaaaggccggatca
gccgaagatgcaagcgcggcaaaaggcgcagcaaaaaccaaaacggtggaaaaaaccgct
acgaaggccaaaagcactgccaaacccgctgtaaaaagcaaagcagccgccggaagtgaa
gccgagggcgtggaaaaaaccgtaaagaaagccaaggccgaagaaaaaacgccgggggcc
gccagctctgccgccgcagctcccaagcgcacggcccccaaggccgcaaccgcaaaaagc
aaacaggcgaccacaaagagcacgggcaagcctgccgccggaaccgcaaaaagtggctct
gaagacgcgcctgccgacaagacagcctctgctgccgcaggcgccaaaactgccaaaagc
gcacccaaggccacggccggaaccgctgctccaaaagcggtagccgcaaaagcgccggac
gccaaagatgcagcccccagcgtggcgcaatcccccaagagtgcaagccaaactggtgaa
aagctcccgggcgctgatgctgccaaggcccctgcggacacggccgcaaacaaggtacag
actgccgctcccagtgccgctgccaaggacggcactgttgccgcaggcgcacccgaagcc
ggtgcaaaagcagccagcgccgccaggtcccgcgcggcaacaaaagcgcgcgcagccact
gcccgcaaaaaaacgacagacaaaagcgctgacaagagtgctgccgaaggcagggtcgcc
ccggcgcagccgaagtcgaccgccgcagcagcaacggttgcaggcgccgctgaaaaaatt
tctccgccctccgccggtgcgactgcgccggccatgccgacccccccggcctccagcagc
gcccgtgaaggcaaagacctcacgccccctgccccggcagcagccgtagcggaacacgcg
gcagagcacacggccgggcagccccgctcggcagccaacgccgaaaaggcaaagcccgcc
gcctcttccgccgctcatccgacagccgctcacggcactgtaaaaacggaaacagcagtg
ctggccctggccgccacagaaaggctggccctgacgggacggaactctcttgccattgaa
aataccgaacttctggcgcttacgctcacaaccagcgagaccgtccctcaggaagaaaac
ggcgcaggcgccgaggcctccgaaacttccggtgaagtgccgcgccgcaagaacaggcgc
ggacggcgcggaggacgcggacggaaccgcaaaaaagaactgaacggtgaaaatggcgac
gctctggctgccgggacctctgccgccgacagcgtacacagtgaagattctttgcagaac
gaggacgaaggcttttccgcagaaagcccacaggctcccgccgtcagcggcaatgccccc
gatgaagctgccgccaaggaaagcccgggcgcagccccggcggcaagcagcaaaaaaacc
gctcccactgagaccggcaagcacaaaagcaagtctgagtcggcaaacgcacggcggcgc
atgttcatcagcgttctgcccggcgaacaggtggaagtggcgttgaccgaagacggccag
ttgctggaatattacctggacatgctgcaccagcgcaaaatcaagggcaatatttacaag
ggcgtcatccacaacatcgataccaatcttcaggccgcgtttgtaagctatggcgccgga
aaaaatggctttttgcagatagacgaaatccaccccgagtactggctgacgcatcatgaa
ccggccaagggcaaaaagtttccccctatccagaaggtactcaaggccggtcaggaagtg
cttgtacaggtcgtcaaagaacccacaggcagcaagggcgcttttttgaccacatggctt
tcgctggccgggcgttttcttgtgctcactcccgggcaggagcagatcggcgtgtcgcgc
aaggtggatgatgaagaagaacgcagccgcctgcgcgaaatgatgaacggcattgatccc
ggccaggggttgggcgttattgtgcgcactgtcagcgcggggaccaccaaaacgactctc
aaaaatgacctgcaatacctcaagagggtctggcgcgacatccgtaaaaaggccacggag
gtcacggctccgtctcttatctatcaggagccgggcctgtcggaacgcgccgtgcgcgat
tatctgacggatgacgtgggcgaaatatgggttgataacgaagacgtggcacagagcatt
cgcgaaaccgtcaacctgcttttcccccgcaaaagcgacctggtgcgcctgcacagcgat
gtgcggacatccatgtgggaacgcttcagcctgcgccgtcagctggaccagatatacacc
cgcgaggtgctgctgccctcgggcggcaggctggttttcgaccagacagaagcccttatg
gccgttgacatcaactccggcaaaatttcgggcaagggcaattttgaggcaatggcgcac
aagaccaacatggaagctgccgaaaccatagctcgccacctcaagctacgtgatatcggc
ggccaggttgtcattgacttcattgaaatgcgcgacaaaaagcatatcattgaagtggaa
aaaaccctgcgctccgccatgaaaaacgaccgtgcgcgccacgatgtgggccgcatgagt
gctttcggccttctggaactggtgcgccagcgcaccgggtcttcggctctggctatcacg
atggaaccatgcccggcctgcggcggcacagggcagcgccgtaaccttgagtggcaggct
cttcaggccctgcgcgaactacgccgcatgctgcgcgccgagagcaaggaaaaatgcgtt
tacggcacgtctgccgaactggctctgtatctgctcaaccacaagcgcgacagcttgcgc
gaaatggagcaggactacggcaaatgtctggaaatatccgttcgtccgtaa
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