Dehalococcoides mccartyi GT: DehalGT_0379
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Entry
DehalGT_0379 CDS
T01182
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
deg
Dehalococcoides mccartyi GT
Pathway
deg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DehalGT_0379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deg03019
]
DehalGT_0379
Messenger RNA biogenesis [BR:
deg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DehalGT_0379
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADC73746
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Position
359912..361567
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AA seq
551 aa
AA seq
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MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIP
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGSRGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMATDLGYLKVPEGLVCNIEQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVKPKYFVPVHGEYRHLTMHAELARTMGVAPENAFVMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacctaaacttaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaagacatcatcctgatagactgcgggcttatgttcccc
gaagaagaaatgctgggtatagatttggtaatacccgacatttcatatgtactggaaaac
cgtgaaaaagtacggggtattgtcattacccacgggcatgaagaccatataggggcgtta
ccctatatacttccccagataaatgtacctatttattgtactaaacttacccaagggctt
atttcggtaaagctgaaggaagccaaactgctccaccagaccaagataaatgttatcccg
tctgatggcactttcaagctgggtaaacttaaagtggatttttatccggtctgccatagc
ctgccggattcggtgggactggttatccagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagacggcaaacctaccaatctatcacgtttggct
atgctgggctcgcgtggagtactgcttttgatgtcagattccacccatgtggagctaccg
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggttaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcgcaagctcttttttgccggccgcagtatgactgaaatt
cataaaatggctaccgatttgggctaccttaaagtgcctgaaggtctggtatgcaatata
gagcagcttcagcgtgtacccccggagaaagtggttttgatgactaccggttctcagggt
gaacctacctctgcccttgttcgtatagccaaccgtgatttccgccatgtccacataatg
aaaggggataccgtaattatttcggcgtcccccatacccggcaatgaatcactggtaagc
cgtactatagacagccttttccgccaaggggctaaagtgttttatgaccgcatagccaaa
gtacatgtacacgggcatgccagtcaggaagaactgaagctggtactcaatctggtcaaa
cccaagtactttgtgcccgtgcatggcgaataccgccacctgaccatgcatgccgagctt
gcccggactatgggtgttgctccggaaaatgcctttgtcatggaagacggggatatactg
gagttaaataccaagtccggtcgtattacgggcaaagtcccgtccggcaatgtctacgta
gatggtttgagtgtgggtgatgtgggcggggtggtactccgcaaccgccgtatgctttca
caggacggtatcgtagtggcaattgtggctattaacaagcaaaccggtatgctggtgggc
aggccggatattgtttccaggggatttgttgatcctgatgaatctaaagctatgctggat
gccagtcgtgaccttataatcaagctgcttgaccatgacggtaaggatattcccgagggg
gctatgtataatgatgttaaagaaacgctgaacaagttttactacgagcagactaaacgg
cgtcccatggttatcccggttatggtaaaagtgtag
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