Dehalococcoides mccartyi GT: DehalGT_0489
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Entry
DehalGT_0489 CDS
T01182
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
deg
Dehalococcoides mccartyi GT
Brite
KEGG Orthology (KO) [BR:
deg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DehalGT_0489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deg03021
]
DehalGT_0489
Transcription machinery [BR:
deg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DehalGT_0489
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CENP-B_N
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ADC73856
LinkDB
All DBs
Position
complement(452014..453576)
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AA seq
520 aa
AA seq
DB search
MPAEKDKKEFSPDDIDDDKDAEQGLANIHDEQDAEAEGDKLAEPDLKDIADTDIPAELTE
EELAAEADLIPDTDEEISPLNIDLDIPLEQIDTQGIVDDPVRMYLHEIGRVPLLSAEDEK
TLAKKMEEGKRIREIRQECLEKRGRYPSAAESFLCMLRELAQATEVLFQLGQELGMDTSA
SLKTIIHNPKLRTAIDHEIDQQLTKNISDNTGKSMAEIEQSFINLAINSSLLPKVVLDAI
PEKMTIPEISDHTYDTTFINHLERHEASLKYYLDNLEIDAKRAERHLIQANLRLVVSVAK
KHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRI
PVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIG
EEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRT
LEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYLE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgagaaagataagaaagagtttagccctgacgatattgatgacgacaaggat
gcggaacaagggctggcaaatatccatgatgaacaggatgccgaagctgaaggcgacaaa
ctggcagagcctgacctcaaggatatagctgatacagacatacccgccgagctcaccgaa
gaagaactggcagccgaagcagacctgataccggataccgatgaagaaatcagcccgctg
aatattgatcttgacataccccttgaacagatagacacccagggtatagtagatgatccg
gtacgtatgtatctgcatgaaataggccgggtaccccttctttcggccgaagatgaaaaa
actctggccaagaaaatggaagaaggcaaacgcattcgcgaaatccgccaggagtgtctg
gaaaaacgcgggcgttacccgtctgccgccgaatcttttctgtgcatgctcagggagctt
gcccaagctaccgaagtcctgttccaactgggacaggaattggggatggatacttccgcc
agtttgaaaaccattatccacaaccccaaactaaggacagctattgaccacgagattgac
cagcaactcaccaaaaatatctcggataataccggcaagagtatggcggagatagaacag
tcttttatcaatctggctataaacagctccctcctgcccaaggttgtgctggatgccata
cccgaaaaaatgactatacccgaaatatcagatcacacttacgatactacctttataaat
catctggaacggcatgaagcaagcctgaagtattatctggataaccttgaaatagacgct
aaacgggctgaacgccatcttattcaggccaacctccgcctggtggtcagtgtggccaag
aaacacattggcaggggcatgcctctgcttgaccttatacaggaaggtaatatcggtctt
atccgtgcagtggaaaagtttgacttccaccgcggtttcaagttttccacttatgcaaca
tggtggatacgccaggccattacccgggctattgcagaccaagccagaactatacgcata
cctgttcatatggtagaaaccattaacaagctgctttcaataagccgccagctgtcccaa
aagcttgggcgtgaacctaccccggacgaaatagcccttgagatggacctgccgccagaa
aaggtacgtgaaattgccaaggtttcccagttgccggtttcactggaatcccccatcggc
gaagaagaagatagccatctgggagactttattgaagaccagaacgcactggcaccgccg
gatgccgcttcacgccagttgctaaaggagcaaatagatactgttctgggcagcctgacc
ccgcgtgaacgccgggtacttcagctccgcttcggactggaagatggccgaagccgcact
ctggaagaagtgggtaaagagtttaacgtaacccgtgaacgtatccgccagatagaggcc
aaggctctgcggaaactccgccaccccagccgcagccgcaaacttaaggattatctggaa
taa
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