Dehalococcoides mccartyi CBDB1: cbdbA1348
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Entry
cbdbA1348 CDS
T00273
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03030
DNA replication
deh03410
Base excision repair
deh03420
Nucleotide excision repair
deh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
cbdbA1348 (polA)
03410 Base excision repair
cbdbA1348 (polA)
03420 Nucleotide excision repair
cbdbA1348 (polA)
03440 Homologous recombination
cbdbA1348 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deh03032
]
cbdbA1348 (polA)
03400 DNA repair and recombination proteins [BR:
deh03400
]
cbdbA1348 (polA)
Enzymes [BR:
deh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
cbdbA1348 (polA)
DNA replication proteins [BR:
deh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
cbdbA1348 (polA)
DNA repair and recombination proteins [BR:
deh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
cbdbA1348 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
cbdbA1348 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH
RecR_HhH
DNA_pol_lambd_f
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
CAI83397
UniProt:
A0A916NVS2
LinkDB
All DBs
Position
complement(1067442..1070153)
Genome browser
AA seq
903 aa
AA seq
DB search
MSKPVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDCYAISF
DKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLA
TRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGLGPEHV
ADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEV
ARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGGENPGGGMT
DMFNTPQKVETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAISPAEG
EAYFISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMNLLASAGQEIQGL
DFDTMLSAHLLGEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVAD
YTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIF
KLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM
GREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNIL
PSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRVAIYFAEI
KHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE
KLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWG
DME
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacctgtaattgtcctttttgacggcacaaatctggttcatcgggcatatcat
gtactgccacctcttacagtccgcaaaacaggtgaagtggtgggggcggcctttggtttt
gcctctatacttataaaagtcttaaccgacctgaaaccggattgttacgctatatccttt
gataaaaaaggccctaccttcaggcatgagatgttcaaggactacaaagcccaacgtccg
cccatgcctgacgagcttgtcagccagctgggacgggtacgccagattgtggatgctttc
aatatgcctgtatacgaacagagcggttttgaggcagatgatgtgctgggcacactggct
accagagccgccgccgaaggcatggaggttataatagcctccggagacgcagactccatg
cagttggtcagtccggatattcgtattctgtatcccggcccggccggttctttttccaat
accagtctgtatgacgaggcggcagtaagggcaaagtacggtttagggccggagcatgtc
gcagattacaaagcccttatgggtgatccgtctgacaacatacccggagtacccggcata
ggcccgaaaactgcccagaaacttatagaagaatacggcggcatagaagatatatataaa
aatctggataaaataagcccgcccggtctccaaaagaaactggcagacaacgccgaagta
gcccgccagagtaaaatattaactacgattgtgtgtgatctgccgctggatttcagtatt
caggaatgtagatcggaacactataaccgccaaaaggtggtagacctttttcgtgaactg
gagtttttcaggctgattaaccgcctgccaggcggtgaaaatcctggcggcggtatgaca
gatatgtttaacaccccccaaaaggttgaaacccgctatattgtagccaacgggcagaat
ctagacagcatcgtgaagcggttcacggaaaccaaagagctggcactggcagtttcgggc
acttccgaagaagctatagatgcccgcctgactgcgctggcaatttcaccggcagagggc
gaagcctattttatttctgcagaatttatcggtagtgcttcggatgggcagatgtttgtt
tccgaaggtcacccgggtttgattgccctgcttacgaataaaaatataaccaagaccgct
cataatgccaagtacctcatgaatctgctggcttcagccgggcaggaaatacagggactg
gactttgataccatgctttctgcccacctgctgggtgaaaaaaatctgggtataaaagac
ttggtatttgaacacttcggggtggaaattgctgatgttgaaaacatacttactcagaac
ggcaagaaaaagagcttcagtgcatcagagctttcagaagccgcccagttggtggctgat
tacaccttccgcctcaagggtctgtttgccgcccagcttgccgaaaccaagctgatagat
ttgtttgtcaatgttgaaatgcctttggtacctatattactgggtatggagcgtagcggt
attatgctggataccgatttgctcaaaggtatggccgaaaaggtgggcgggcagatattt
aaactggaagaagccatatatgcccaagcgggacacagcttcaacataggttctccccag
cagctggggcggatactttttgacgaactgaaactgccggttatcaaaaaaaccaagacc
ggttattccaccggggcagaggtactggatgaactgaagggtgaacaccggattgtagac
ctgatacttgaatatcgtatgctggtcaaactgaaatctacctatctggatactctgccg
cgtatggtgaatccgcatacccgtcgcctgcataccagtttcaaccagaccagaacggct
accggcagattgtcttccagtgaaccgaatctgcaaaatatacccgtcaggggtgaaatg
ggcagagaaatacggcgggcatttattgccccgaagggtaccgtaatgctggctggagat
tactcccagatagacctgcgggtgctggcccatctttccggagaccctgccctgatagag
gcttttcttaaggaccaggatatccacactgctaccgctgccagattgctgaatatactc
ccgtctgaagtgacaaaggaacaacgccgtctggctaaaacggtgaatttcggagtgata
tatggcatgagcagctacgggttggaacaggctaccgagctttcactggcagaggccgac
aaatttatcaaggcatattttgaaaaatacccgcgggtagctatttactttgcggagatt
aagcatcaggctcggactaacgggtacgttgagaccctgctgggaagacgccggtatata
cctgaaatcaattcgcccaaccggattttgcgtgaatcggccgaacgtatggccataaat
atgcctgttcagggtacgtctgcggatattatcaagctggctatggtcaggctggatgaa
aaactgaaagaagaaaagctggaaagccgcctgctacttcaggtgcatgacgagcttata
tttgaagtgcctgacgcagagcttaagcgtatgagtgctttgcttatggaaactatgtca
ggtgcagtcacctttgaaataccgcttaaggttgagcttaagtccggagcaaactgggga
gatatggagtaa
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