Dehalococcoides mccartyi CBDB1: cbdbA1369
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Entry
cbdbA1369 CDS
T00273
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cbdbA1369 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deh03021
]
cbdbA1369 (rho)
03019 Messenger RNA biogenesis [BR:
deh03019
]
cbdbA1369 (rho)
Transcription machinery [BR:
deh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
cbdbA1369 (rho)
Messenger RNA biogenesis [BR:
deh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
cbdbA1369 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
nSTAND_NTPase5
OB_RNB
ATPase_2
Spore_III_AA
AAA
Mor
NACHT
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
CAI83415
UniProt:
A0A916P5H5
LinkDB
All DBs
Position
complement(1087496..1088770)
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AA seq
424 aa
AA seq
DB search
MEIGQFELSELEKKTREELLDIAKEMGINGVTALKKQDLVMRLIQVYTESQGNVFCSGIL
EIMPDGYGFLRQASLLPSSSDIYVSQSQIRRFGLRTGDMVIGQGRPAKPGEKYYSLLRVE
AINDLNPEMAKRRPNFGALVPTFPDRLINLETTPTELATRLINLIAPIGRGQRGLIVSPP
KAGKTTILKNIANATATNYNDIHIMVVLIGERPEEVTDMRRHVRGEVMAATFDEPVENQT
RVAELALERAKRMVESGKDVFILLDGITRLTRAYNLAMPSSGRTLSGGIDPVALHPAKKF
FGAARNTEEGGSLTIIATCLVETGSRMDDLIYEEFKGTGNMELHLERRLAERRVFPALDI
PRSSTRREELLLGDNYKQVQLLRRMVAIIADDANHFTEVNERLLDRLRRSKNNAEFLANL
QKEM
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcggacaatttgaactgagtgaacttgaaaagaagactcgcgaagagcttctg
gatattgccaaagaaatgggtataaacggggtaactgcccttaaaaagcaggacttggtg
atgcgccttattcaggtttataccgaatcccaggggaatgtattttgttcgggtattctg
gaaataatgccggacggatacggattccttagacaggcatctctcctgcccagctcatca
gacatatatgtgtctcagtcccagatacgccgtttcggacttcgcaccggtgatatggta
ataggccaagggaggccggccaagccgggtgagaaatattacagccttttgcgggtggaa
gctatcaatgaccttaaccccgaaatggccaaacgccgcccgaatttcggtgccttggtt
cccacctttcctgaccgcctgataaatctggaaaccacccccaccgaactggccacccgc
ctcataaacctgatagcccccataggcaggggacagcgcggtcttattgtttccccgccc
aaggccggcaagaccaccattttgaaaaacatagctaatgccaccgctaccaattataac
gatatacacataatggtagtccttataggcgaacgccctgaagaagtaaccgatatgcgc
cgccacgtgcggggcgaggtaatggccgccacctttgacgaaccggtagaaaaccagacc
cgggtagccgaactggcactggaacgggccaagcgcatggtagagagcggcaaagacgtc
tttatcctgctggacggcattacccgccttacccgtgcctacaacttggccatgccctca
tcaggccgcaccctttccggcggtattgacccggtagccctccaccccgccaagaaattc
ttcggggcagcccgcaataccgaagaaggcggctctcttaccattatcgccacctgtctg
gtggaaaccggcagccgcatggatgaccttatttatgaagagttcaaaggcaccggcaat
atggaacttcatctggaacgccgtttggccgaacgccgtgtattcccggctttggatata
ccccgctcaagcacccgccgtgaagagcttctgctgggtgacaactacaagcaggtacag
ctcctgcggagaatggtagctattatcgctgatgacgccaaccactttacagaggttaac
gagcgcctgctggaccgcctgcgccgctccaagaacaatgctgaatttttggctaacctc
cagaaggaaatgtaa
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