Dehalococcoides mccartyi CBDB1: cbdbA189
Help
Entry
cbdbA189 CDS
T00273
Name
(GenBank) ATP-dependent RNA helicase, DEAD
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cbdbA189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deh03019
]
cbdbA189
Enzymes [BR:
deh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
cbdbA189
Messenger RNA biogenesis [BR:
deh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
cbdbA189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAI82439
UniProt:
A0A916NYD8
LinkDB
All DBs
Position
172497..174182
Genome browser
AA seq
561 aa
AA seq
DB search
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTDTPSEMPV
SPARPFNPGFRPSRPANSAPRFHREGNFAPRMQSHSSFEGTSAPAARPAARYNDRPAFRK
ENSFQTTEASRPSFRKETGFTPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNK
VGKPPFFRRSKPAVSEKNETY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgatccggctgttatggctggagtcagggcctgcggc
tataaagagcccacccccattcaggcacaggctattccccccattatggctggacatgat
gttatcggtctggctcagaccggcaccggtaaaaccgctgcttatgccttgcccattatt
caaaaaatgctttctacccccaggggacgggtgcgtactctggtaattgcacccaccagg
gaactggcttgccagatttctgatagttttcgttcacttggccagcgcgcccgtatacgg
gagtgctccatttacggtggagtgaatatggaccagcaaattcgccgcttacggagcggt
gtagacgtagtagtggcttgccccggcaggcttctggatcacatatggcggggaactatt
gatgtctgcggggtggaaaccctgataatagacgaagctgaccgcatgtttgacatgggt
ttccagccggatatccagagcattttgaagtgtctggttcagccgcatcaaacccttttg
ttttcggcaaccatgccgccggaagtccgcaagcttactctggaaactcagactaatccg
gtaactgtacaggttggtacccagtctccggtaagcagtgtcagccatagtgtttatccg
gtgaaaagtcaccagaaaaccccgttactgcttgaaatattgaaaacggtagaaaccaag
tcagttctgatatttgcccgcaccaaatatggagcggaaaatctggctgatgaaatatcc
aaggccgggtttactacagcctcccttcagggcaatctttcccaaaaccgccgtcatgct
gttatggaagggttccgccgcgggaatttcaaaattctagtagctaccgatattgccgcc
agaggtttggatattgaccatatatcccatgtaataaattacgatatgccggattccccg
gaagactatactcaccgtattggccggacaggacgctttgaccgcacaggacaggctttc
agtctggtaaccggacgtgacggggatatggtaagagatatccagaggcttttaagcagc
cccattcagcgtctgcgggttgacgggtttgattatgctacgacccgcaatgatggacag
aaccagtcacagcgcagggattttgcaccccgccggggttattcccatggcggttataat
cgccctgaaatggctgtaaatgaaacttcacaaacggatactccgtctgaaatgccggta
agccccgcaaggccttttaatcccggtttccggcccagccgtccggcaaattctgctccc
cgtttccatagggaggggaactttgccccccgtatgcagagccactcttcttttgagggt
acctctgccccagcggccagacctgcagcccggtataatgaccgtcctgcttttagaaaa
gaaaacagttttcaaactaccgaggcgtcacggccttcttttaggaaggaaacagggttt
actccccgtgagcatacgcaggctgattttgaaaatagcgaacagccttcaggcaggcgt
cctgcccggtttaacgggaaagcttcttttgcagaccgcccggcacgttcggggaataaa
gtggggaaaccgcccttctttaggcgttcaaaaccagctgtttcagagaaaaacgaaact
tactag
DBGET
integrated database retrieval system
