Dehalococcoides mccartyi CBDB1: cbdbA392
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Entry
cbdbA392 CDS
T00273
Name
(GenBank) metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cbdbA392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deh03019
]
cbdbA392
Messenger RNA biogenesis [BR:
deh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
cbdbA392
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CAI82603
UniProt:
A0A916NUC2
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All DBs
Position
334599..336254
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AA seq
551 aa
AA seq
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MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIP
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGARGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMATDLGYLKVPEGLVCNIEQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVKPKYFVPVHGEYRHLTMHAELARTMGVAPENAFVMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacctaaacttaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaagacatcatcctgatagactgcgggcttatgttcccc
gaagaagaaatgctgggtatagatttggtaatacccgacatttcatatgtactggaaaac
cgtgaaaaagtacggggtattgtcattacccacgggcatgaagaccatataggggcgtta
ccctatatacttccccagataaatgtacctatttattgtactaaacttacccaagggctt
atttcggtaaagctgaaggaagccaaactgctccaccagaccaagataaatgttatcccg
tctgacggtactttcaagctgggtaaactcaaagtagacttttatccggtctgccatagc
ctgccggattcggtgggactggttatccagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagacggcaaacctaccaatctatcacgtttggct
atgctgggtgcacggggagtgctgctccttatgtcagactccacccatgtagaactgccg
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggttaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcgcaagctcttttttgccggccgcagcatgactgaaatt
cacaaaatggctaccgatttgggctaccttaaagtgcctgaaggtctggtatgcaatata
gagcagcttcagcgtgtacccccggagaaagtggttttgatgactaccggttctcagggt
gaacctacctctgcccttgttcgtatagccaaccgtgatttccgccatgtccacataatg
aaaggggataccgtaattatttcggcgtcccccatacccggcaatgaatcactggtaagc
cgtactatagacagccttttccgccaaggggccaaagtgttttatgaccgaatagccaaa
gtacatgtgcacgggcatgccagtcaggaagaactgaagctggtactcaatctggtcaaa
cccaagtactttgtgcccgtgcatggcgaataccgccacctgaccatgcatgccgagctt
gcccggactatgggtgttgctccggaaaatgcctttgtcatggaagacggggatatactg
gagttaaataccaagtccggtcgtattacgggcaaagtcccgtccggcaatgtctacgta
gatggtttgagtgtgggtgatgtgggcggggtggtactccgcaaccgccgtatgctttca
caggacggtatcgtagtggcaattgtggctattaacaagcaaaccggtatgctggtgggc
aggccggatattgtttccaggggatttgttgatcctgatgaatctaaagctatgctggat
gccagtcgtgaccttataatcaagctgcttgaccatgacggtaaggatattcccgagggg
gctatgtataatgatgttaaagaaacgctgaacaagttttactacgagcagactaaacgg
cgtcccatggttatcccggttatggtaaaagtgtag
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