Dehalococcoides mccartyi CBDB1: cbdbA587
Help
Entry
cbdbA587 CDS
T00273
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
cbdbA587 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deh03021
]
cbdbA587 (rpoC)
03400 DNA repair and recombination proteins [BR:
deh03400
]
cbdbA587 (rpoC)
Enzymes [BR:
deh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
cbdbA587 (rpoC)
Transcription machinery [BR:
deh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
cbdbA587 (rpoC)
DNA repair and recombination proteins [BR:
deh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
cbdbA587 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAI82767
UniProt:
Q3ZX00
LinkDB
All DBs
Position
479993..483880
Genome browser
AA seq
1295 aa
AA seq
DB search
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFEC
ACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNL
STRSLERIIYYSHFIITAVNDDAREKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATV
EAINQIRRDFSTEREQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAE
ALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS
QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLN
RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM
LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPKAVEFQNMDIPKSAIKKIIGRCYKILSSQDMA
VMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAIAEGQFARGLITEDER
YNSIIETWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGR
IIDFPIKSSLREGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQED
CGTANGTWIIEPKEKGMLPPLVDRILGRWTAHNVVHPQTGEIIVDNNEEIDEIKAKAIGE
AGITEVFVRSPLTCESTHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRT
FHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRIASDEVYQ
DEYELPSGWKTQVQSRQWVDSGMVLASPELEGKSKAVVQSDQNVVARVAGEVTVEGNLIT
IKYSESEEREYTIPAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEV
QKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLI
PAQCKSCKEATIERAERIAAAASAPAMSGLPENCL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttaacgattttgatgctatacggatttcactggcttcccctgaccagata
agaagctggtcttatggtgaggttaccaaacctgaaaccataaactaccgtactttgaaa
ccggagcgggatggtttattctgtgagcgcatttttggcccgatcaaggactttgagtgt
gcctgcggcaagtacaaacgtatccgctacaagggtattatctgtgacaagtgcggcgtg
gagattgcccgtgccaaggtacggcgtgaacggatggggcatattgaattggcttgtccg
gtaggccatatctggtttacccgcggcattcccagccgggttggcttgctgcttaacctt
tctacccgcagtcttgaaaggataatttattattcgcatttcattatcactgcggtaaat
gatgatgcccgtgaaaaggctatcaaagaccttgaggttatctcatcccagagggtagca
gacaagggcagtgaagtagatactcgggtagcccaaatggaagctgaagatgctactgtt
gaagctataaaccagattcgccgtgacttctcaaccgaacgagagcaaatggaagaagat
atccagttgcttatagaccagctgaaagacctgcaaaagggcaatctgctgaccgaaaac
cagtattacgaactgaaacaacgtttcagcaatgtttttgaggcatctatgggtgctgaa
gccctgctgaaactactttcatatattgatatggacaaggaacggagcaaacttattcag
gaaacccgctccacttccggccagcgccgcaaaaaggccggcaaacaactccagctggta
gaagccttccgccgctccagcaacaaacctgaatggatgataatgactgttctgccggta
ctgccgccagaccttcgtcccatggttcagcttgatggcggccgttttgccaccagtgac
ctgaatgacctttacagaagggttattaaccgtaacaaccgtctccagcacctgatggaa
atcggggcaccggagattattatccgcaacgaaaagcgcatgcttcaggaagcggtagat
tcgcttattgataacggacgccgaggcaagagtgtagctgtaaatggtgaccacaaggcc
aaatccctttccgacctgcttcgcggcaaacagggacgcttccgccagaacctgctaggt
aaacgggttgattactctggtcgttctgttatcgtggtagggccttcactcaagctttca
cagtgcggtttgccccgccgtatggcgctggagctgtttaagccctttgtcatgcaccgt
ctggtacgggatgggttagcccccaatatcaagagtgcccgccgtttggtagagcgcgcc
cgcccggaggtttatgatattttggaagaggtagtcaaggacaggccggttctgttgaac
cgtgctcctactttgcatcgccttagtatccaggcctttgaaccggtacttatagacggc
agcgccctcaggcttcacccgctggtctgttcagcctttaatgctgactttgacggtgac
cagatggctgtccacgtgcctctttccaaagcggccgtgaaggaagcccgggaaaccatg
ctttctattcataatatgatgcttccctccagtggtgaaccggtagtatctcccagcctt
gacatggtctttggctgttactacctgaccaccactcgtccgggtgccaagggtgagggt
aaaatattcggtgactttgaagaagccaaacgttattatgaaatgggcatcattgacctg
cgggctattatcaaagtccgggacggcaagggtaatatgctggaaaccactaccgggcgg
attatctttaatgatgtcttgcccaaggctgtagagttccagaatatggatatacccaaa
tccgccattaaaaagattatcggacgctgttacaagatactttccagccaggatatggct
gtcatgctggacaagataaaagaactgggtttcaaatttgctaccagttccggtatttcc
atcgccatgagtgatatttcagtaccgcgtgaaaaaaccaagctggtagccgccgctgat
gagcggactgccattgccgaaggtcagtttgcccgcggccttatcaccgaggacgaacgc
tacaacagtattattgaaacatggatggaaactactgaccgcattactgatgctattcag
gcgggctttgacaaacagggttctgtttacatgatggctaactctggtgccaagggtaat
atttcccagatacgccagatggctggtctgcgcggtcttatgactaacccttccggccgt
atcattgacttccccatcaagtcttccctgcgtgaaggtttgacagccctggagtacttc
atatccacccatggtgcccgtaagggtttggcggataccgctttgcgtacttctggttca
ggttacctgactcgccgccttatagacgtaactcaggatgttattattcttcaggaagac
tgcggtactgcaaacggcacctggattatagaacccaaagaaaagggtatgttgccgccg
ctggttgaccgcatacttggccgctggacggctcataatgtggttcacccccagactggc
gaaattatcgtggataacaatgaagagattgatgaaatcaaggctaaggctatcggcgaa
gccggtattaccgaggtatttgtacgctctcctcttacctgtgagtccactcatggcatg
tgccgccgctgctacgggcgtgatcttggtcgtgttcgtctggtagatatgaataccgca
gtcggtattattgccgcccagagtatcggtgaacccggtacccagctgacacttcgtacc
ttccacaccggcggtgtggtaggcgtagatatcactaccggtcttcccagagttgaagag
ctctttgaggcccgtccgcccaaagttcagtccattatctccgagatagacggtgtggta
gaggttattgaaaatgaaaacggccgccatatccgcatagcctcagatgaagtctatcag
gatgaatacgaattgccttccggttggaaaactcaggttcaaagcagacagtgggtagat
tccggtatggtattggcttcacctgaactggaaggtaaatccaaggcagttgttcagagt
gaccagaatgtggttgccagagtggccggtgaagttaccgtagagggtaatcttattacc
atcaagtacagcgaaagcgaagaacgggaatacaccatacctgccgctatgcagataaag
gttaaaaccggggataccatccgtgccggacaacagctgactgacggctcaataaacccg
caggatattctgtccattttgggcagagatgccgttcagaaatatctggttgaagaagtc
cagaaggtttactactctcagggcgtacatatcaacgataagcacatagaggttattgcc
cgccagatgcttatcaaggtacgtattgattcttccggtgatacagaccttgttccgggt
gaactggtagacaagttccgctacgaggatatcaatgccaaggttctggccgaaggcggt
gaaccggcaactgctcacaccgtacttatgggcattacccgtgcctcccttagcactgaa
agctggctggctgcggcttccttccaggaaaccacccgcgtgcttactgatgccgctatt
tacggcagagtagacaagctatccggcctgaaggaaaatgttattattggtaagcttatc
cctgcccagtgcaagtcctgcaaagaagctactattgaaagggctgaacggatagctgcg
gccgcttctgcacctgccatgagcggtctgccggagaattgcctctag
DBGET
integrated database retrieval system
