Dehalococcoides mccartyi CBDB1: cbdbA932
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Entry
cbdbA932 CDS
T00273
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cbdbA932 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deh03019
]
cbdbA932 (pnp)
03016 Transfer RNA biogenesis [BR:
deh03016
]
cbdbA932 (pnp)
Enzymes [BR:
deh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
cbdbA932 (pnp)
Messenger RNA biogenesis [BR:
deh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
cbdbA932 (pnp)
Transfer RNA biogenesis [BR:
deh03016
]
Prokaryotic type
tRNA degradation factors
cbdbA932 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KhpA-B_KH
KH_2
Alg14
CsrA
Motif
Other DBs
NCBI-ProteinID:
CAI83060
UniProt:
Q3ZXV6
LinkDB
All DBs
Position
761182..763344
Genome browser
AA seq
720 aa
AA seq
DB search
MITANSFERTIGGRKLVIESGKLARLADAAITIRYADTELLVTLCSAKKPREGVDFLPLT
IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNDLQIIITVIAS
DKENDADIWGVVGASTVLAMSEIPYEGPVGASRIGYINGEFVLNPTFAQLESSQLDLVVV
STRKAVVMIEAGSKEIPEDIMINAIEFAHKANQELIDLQDEIRAKLGKEKLPVPVLEIPE
EVKTAVAAFVKGRVNEALSHQDKTARENAVEGLQAELVAALSETFAEGDILAAYDKEIKK
AIRSTILEKDIRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQ
QLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPY
TIRLVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIE
GIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDIIRDAIYQAKEARYNILDVMDKALA
QPKTELSPYAPRMYKINIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGATDE
ASAKKAIKIIEDLTKDIEAGSIYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKV
EDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPISRNRDSQPRRPGPFRPSDRSNS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
ttgataactgccaactcatttgaacgaactatcggcggcaggaaacttgttattgagagc
gggaaacttgcccgtcttgcagatgccgcgattactatccgctatgcggatactgaatta
ctggtaacactttgttctgccaagaaacctcgcgaaggggtagattttctccccctgact
atagattacgaagagcggatgtatgccgccggcaaaatccccggcgggtttatccgccgt
gaaggccgccccagtgaacaggctattttggctgggcgactgactgacagacctcttcgc
cctcttctccccaaagagtggcgcaatgatcttcagattattattaccgtaattgcttca
gacaaggaaaatgacgctgatatctggggcgtagtgggtgcttccacagttctggccatg
tctgaaataccatatgaaggtccggtcggagccagccgtattggatatataaacggtgaa
tttgtgcttaatcccacttttgcccagttggaatcaagccagctggatctggtggtagtc
agcacccgcaaagcggtggtgatgattgaagccggttccaaagaaattcctgaagacatt
atgattaacgctattgagtttgcccataaggcaaatcaagagcttattgacctccaggat
gaaatccgtgccaagctcggcaaagaaaagctacccgtgccggtgcttgaaatacccgaa
gaagtcaaaacggctgttgccgcttttgtaaaaggacgggtaaatgaagcccttagccac
caagataaaaccgcccgtgaaaatgcggttgaaggccttcaggctgaactggttgcggct
ttatcagaaacattcgccgaaggtgatatcctggccgcttatgacaaagaaatcaagaaa
gctatccgctctactatacttgagaaggatatccgggtaaacggacggggtatcaaacag
cttcgccagctggatgctgaaacagggcttttgccccgcgtccatggctctgctttattc
acccgcggtgatacccaggtcatggctataaccacccttggttctttacaggaatcccaa
cagctggatggcttaagtgccgaagataccaagcgttttatgcttcactacaactttgcc
cccttctctaccggtgaagtaaaacgttccggttctcccggacggcgtgaaatcggtcat
ggcgctttggccgaacgtgccttagtgcctgtcctgcccactccggaagaattcccctat
accattcgtctggtagctgacgtggttggctcatcaggctctacctctatgggcagtgtc
tgttcgtccagcctgtcacttatggatgcaggcgtaccggtcaaaaaagctgttgcagga
atctccatcggccttattaccggtgaaaatgatacctactgcaccattactgatattgaa
ggcatcgaagataactacggcgatatggactttaaagttgccggtacccgtgacggcata
accgccatacaggtggatatgaaggtcaagggtatcagttttgatattatccgtgatgcc
atataccaggcaaaagaagcccgctataacatactggacgtaatggacaaagctcttgcc
cagcctaaaacagagcttagcccttatgcccccagaatgtacaagataaatattgacccc
tccaagattggcagtgttatcggcagcggcggcaaaactatccgctctattattgagcaa
accaatactaccgttgacattgaaaatgacggcacagtggttattggtgctactgacgag
gcttcggctaaaaaggccatcaagataattgaagacctgactaaagacatcgaagccggc
agtatttataccggtaaggtcacccgtataatgaccttcggtgcttttgttgaaatcctg
cccggaaaagaaggcatggtacacataagcgaactggccgaccacagagttgaaaaagta
gaagatatagtcaaggtgggtgatgatataacggttaaggttatagagattgataaccag
ggcagggtaaacctgtcacacagggttattctcaatccgaacgctgtacccatttcacgc
aaccgtgattctcagccgcgtcgtcccggtcctttccgcccttctgaccggtctaactca
taa
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