Dehalococcoides mccartyi CBDB1: cbdbA945
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Entry
cbdbA945 CDS
T00273
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
deh03016
]
cbdbA945 (truB)
Enzymes [BR:
deh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
cbdbA945 (truB)
Transfer RNA biogenesis [BR:
deh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
cbdbA945 (truB)
Prokaryotic type
cbdbA945 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
CAI83071
UniProt:
Q3ZXU5
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All DBs
Position
complement(772123..773025)
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AA seq
300 aa
AA seq
DB search
MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS
SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV
KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR
KLGCGAYLKSLVREAYGQFNLANSLDFADLEAAKCDGKLAGILLPLETAIGHLPRVSLDE
KNITRLVNGLEITLDRIDKPEAVAVYNAENSFVAIIQPETDGTWHPAKVFIRQSPKPDAN
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcctgaatatcaacaaacctttcgggataacctcgtttgatgtagttgca
aaagtcaggcgtatttattcccaaaaaagggtagggcatgggggtactcttgacccgtat
gcaaccggagtaattccggtgtttttgggaagatctacccgtcttatagagtatctttcc
tccgtcagcaagacatatctggctgaaatagagctgggagtggagacggatagctatgac
agcgaaggcgaaatcactttccgcaaaacctgtgactatgttacccgtgaaatgatatat
aaaactttgatggattttcagggtgagataatccaaattccccctatgtatagtgccgta
aaacaccgcgggatgcgtctttacaatctggcaaggcaagggatagaggttgaaagaatt
ccccgggtagccacaatttatggcattgaactgcttaactacacttcaccggtactgcgt
gtacggatagaatgcggacacggcacatatattcgttctctggcctttgacttgggtaga
aaactgggttgcggggcgtatctgaaatctctggtaagagaggcatatggccagtttaat
ctggcaaactctctggattttgctgaccttgaggccgcaaaatgtgacgggaaactggca
ggtattctcctcccgctggagacagccattgggcatctgccaagagtttcccttgatgaa
aagaatataacccgcttggtaaatggtctggagataacactggataggattgacaaacct
gaggctgtggccgtatacaatgctgaaaacagtttcgttgctataatccagccggagact
gacggtacttggcatccggctaaagtcttcataagacaaagcccgaaaccggatgcaaat
tag
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integrated database retrieval system
