Dehalobacter sp. CP: AAH944_00605
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Entry
AAH944_00605 CDS
T11158
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
deha Dehalobacter sp. CP
Pathway
deha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAH944_00605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deha03400
]
AAH944_00605 (mfd)
Enzymes [BR:
deha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAH944_00605 (mfd)
DNA repair and recombination proteins [BR:
deha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAH944_00605 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XOF53804
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Position
122531..126100
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AA seq
1189 aa
AA seq
DB search
MPTINDFLYKGLDIGEISAALSRKESPQMIYQITGSEKAAFAAQVSLLKQQALIITYTDE
QAQKWARDLEAWLPGKNIMLFPTTEWLPFEVFSRSHEITAERIRVLSTLLPFNRETDSET
IVVAPVQAIMRKLIRPEKWLIHCILFKVGEQYAVSDLMRLLVEAGYEREETIEGRGQFAL
RGGILDIAPHDRDPVRIEFFDEEVDSIRVFDLETQKSLESISEVLIVPVQEYVIDTKRQQ
DLKGEIKARARKAVGRLQRLDRVEAVKRLHKKVEYLENRLNTGILDESIYPYLSLLSEEY
VPFFEWLDHDCLVFLDEPLRLKEQLDFQSNQRLTEFTDNLEKGEEFVNPDHLFISFEDLL
ASGKRPLLGLSNLLREIPGFDPKRVTNMIARPLAGYGKTSILVEEIQRWKSIGYVIALFA
GNEEQSQRLGQGLKDRSINASLVRMEDPINQGGVYIYPLSINQGFELPVSKMVIFSESEI
YRRERKHQAKPKKSPKETDILSFSDLKPGDYVVHFYHGIGKFTGIETIEVDGIEKDYFAI
RYAGEDKLYVPLDQLQLLQKYLGTEESSTPKLNKLNGNEWNKAKARAQGAVKEMAINLLE
LYAKREGAVGFAYPEDSYWQKEFEDRFPYEETPDQLQSIMEVKNDMMKSRPMDRLLCGDV
GYGKTEVALRAAFKAVISGKQVAVMVPTTILAQQHYNTFRERFMDYPVKIEMLSRFRTAK
EQKQIIQSLKDGSLDIVVGTHRLLSEGVSFKDLGLLVVDEEQRFGVAHKEKIKTLKTNVD
VLTLSATPIPRTLHMSLVGLRDMSVIMTPPEDRFPVQTFVAEFNADLVRDAIRRELYRGG
QVFFVHNRVETLDRVVRLLNLIIPEARCGVVHGQMSETQLEKEMISFLEKEKDILICTTI
IETGLDMPNVNTLIVDGADKFGLSQLYQLRGRVGRSNRKAYAYFLYQPQKILTEEAEKRL
TTIREFTEFGSGFKIAMRDLEIRGAGNFIGGEQHGHLASIGFSLYVKMLKEAVQQLRGET
VEEVAEPVIDIQVKALLPDEYIVDKQIKATLYQRMLGISSEEHLSDFLDELVDRFGNPPD
EVENLAKIIRIRMKAKQLGLEQVVQHKQNISLRFAADPEISGEQLMSIAAKFSYPLSFAA
GEQGNLELNLRLRVSSIEDIFKAIFKLFDILEEYVMHPAAVARTVSGTV
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcctacgattaatgattttttgtacaaaggtttggatattggggaaataagcgctgcc
ttaagcagaaaagagtccccgcaaatgatttaccaaataaccggcagcgaaaaagctgcg
tttgcagcccaggtctccttgctgaagcagcaggctctgatcatcacctatacagatgaa
caagcccaaaaatgggcaagagatctggaggcatggcttccgggaaaaaatattatgctt
ttcccgacaacagagtggcttccgtttgaagttttcagcagaagtcacgaaattacggca
gagagaatccgggtcctgagcaccctgctcccattcaaccgggaaacagacagcgaaaca
attgtcgttgcgcccgtccaggcgatcatgaggaaactaattcgcccggaaaagtggctg
atacattgtatcctttttaaggtcggggaacagtatgcagtttctgaccttatgcgctta
ttggtagaggccggctatgaacgtgaagaaaccattgagggcagaggccagtttgctttg
cgcggtgggattctcgatattgcaccacatgacagagatcctgtcaggatagaatttttt
gatgaggaagtagattctatccgggtatttgatttggagacccaaaaatcgctggaaagt
atttctgaggtccttattgttcctgttcaggagtatgttattgataccaaaaggcagcag
gatctgaaaggggaaatcaaagccagagcccgcaaagccgtcggtcgtttacagcggctg
gatcgggtagaagctgttaagagacttcataaaaaagtagaatatcttgaaaaccggctg
aacacgggaattcttgatgaaagcatttatccttacctgagtctgctgtccgaagagtat
gttcctttctttgaatggctcgatcacgattgtcttgtatttctcgatgaaccgctccgg
cttaaggagcagctggattttcagtccaatcagcgtcttactgaatttacggacaaccta
gaaaagggagaagagtttgttaatcccgatcatttatttatcagctttgaagatttgctc
gccagcggaaagcgtcctttgctgggcctgtcgaatttattgcgggaaatacccgggttt
gaccctaaaagagtgacgaacatgattgcccgccctttagccgggtatggtaagacttca
atcctggtggaagagatccagcggtggaagtccatcggatacgtgattgcactttttgca
gggaacgaggaacaatctcagcggcttgggcaagggttaaaggacagaagcattaatgcc
agtctggtcaggatggaagatccgatcaaccagggcggcgtttatatttatccgctttcg
atcaaccaaggctttgaactgcctgtaagcaaaatggttattttttcagaatcagagata
taccgaagagaacgaaaacaccaggcaaaacccaaaaaaagcccaaaagaaacagatatt
ctttctttcagcgaccttaaaccaggtgattacgttgtgcacttttaccatggaatcggc
aagtttaccggaattgaaaccattgaggtcgatggtattgaaaaggattattttgcgatt
cgttatgccggtgaagataaactgtatgtgccgcttgatcagctgcagctgctgcagaaa
tacctcggaacagaagaatcaagcacacccaagctgaacaaactgaacggcaatgaatgg
aacaaggcgaaagccagggcacagggtgctgttaaagagatggccatcaatttgcttgag
ctttatgcgaaaagggaaggggctgtgggatttgcttatccggaagacagctactggcag
aaagagtttgaagaccgctttccatatgaagaaacaccagaccagttgcagagtattatg
gaggtcaagaacgatatgatgaagtcccggccgatggaccggcttctatgcggggatgtg
gggtacggtaaaactgaagttgctctgagagccgcatttaaggcggtaatcagcggcaag
caggttgcagtcatggtaccgacgaccatcctcgcccagcagcattataatacgtttaga
gaacgctttatggattatcctgtaaaaatcgaaatgctaagccgttttcgcacagccaag
gaacagaagcagatcattcagagtctgaaggacggatcgcttgatatcgtggtcggtacc
caccgtctcctatcggaaggggttagcttcaaggacctgggtctgcttgttgtcgatgaa
gagcagcgttttggtgttgctcacaaagaaaagatcaaaaccctgaagaccaatgtggat
gttttaactctttcagctacgccgattcccagaaccctgcatatgtctctagttggctta
agagatatgagcgttatcatgacgcctccggaagataggttccctgttcaaacatttgtt
gccgaatttaatgcggatctggtaagagatgcaatacgcagagaattatacagggggggc
caggtgttttttgtccataaccgggttgagacactggatagagtggtcagactgctgaat
ttgattatcccggaagcccgttgtggggttgtgcatgggcagatgagtgaaacccaactc
gagaaagaaatgatttcctttttggaaaaagagaaagatattctaatttgcactaccatc
atcgaaacaggtttggatatgccgaacgtcaatacacttattgtcgatggagcggacaaa
tttggcctgagccagctttatcagctcaggggcagggtgggcaggtcaaaccggaaagcg
tatgcctactttttataccaaccgcaaaaaattctgacagaagaagcagaaaagaggctg
actacaatcagggaattcactgaatttggttccggtttcaagattgccatgcgtgatttg
gaaataagaggagcaggcaattttatcgggggggagcagcatgggcatcttgcaagcatt
ggcttcagcctttatgtcaagatgctgaaagaggcagttcagcaattacgtggtgaaaca
gtggaagaagtcgctgagccagtcatagatattcaggtcaaggcgctccttcctgatgaa
tatatcgtggataagcagattaaggctacgctttaccagagaatgctcggcatttctagt
gaagaacacttaagtgactttctggatgaactggtggacagatttggaaacccgcccgat
gaagttgaaaacctggctaaaattatcaggataagaatgaaagccaaacaactgggtctc
gaacaggttgttcagcataaacagaatatctccctgcggtttgccgctgatcccgaaata
tccggagaacagctgatgagtattgccgcaaaattttcttacccgttgtcatttgcagct
ggggaacaaggtaatcttgaattgaatctgcggcttagggtttcgagtatagaagatatc
tttaaagccatatttaaattatttgatattttagaggaatatgtgatgcatccggcagca
gttgccaggaccgtatccggtacagtttaa
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integrated database retrieval system
